The detailed information of tRNA gene sequence


Sequence ID>CHL090800239
Genome IDDQ887676
Search identical group
Phylum/ClassViridiplantae
SpeciesDrimys granadensis
Start position on genome 4042
End posion on genome 1452
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tatattttcc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAtta
Downstream region at tRNA end position 
ccatacggta
Secondary structure (Cloverleaf model)
>CHL090800239	Lys	TTT
                   c      Atta ccatacggta
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2519 (in A-loop)
GTGCGGCTATGATCTTTTACACATTTGGATGAAGCAAGGGATTCGTCCATACCATTGGTATAGTTTGTAA
GACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAATAGCATGTCGTATCAATGGAGAATTTGATTGA
TAATACTTTATCCTTACCGGATCGGTACAAAATCTTGTTTTGATTCTTGGAACGGGACCAAACCAATTCA
CCATTGGGTCGAGTGAATAAATGGATAGAGCTCTATCGCTCCAATTATAGGGAAACCAAAAGTAACGAGC
TTTTGTTCTTAATTCGAATGATTACCCGATCTAATTAGATGTTAAAAATAGATTAGTGCCTGATGGGGGA
AAGGGTTCTCCTGTGAGTAAATTATCGATTCCTTTTTTTAATGAATCCTAACTATTAACTATTCTTTTCT
TTCTCGATTATGGAGTGGAGACGAATGTGTAGAAGAACGGTATACTGATAAAGATCATTTTTCCAAAGTC
AAAAGAGCGATCGGCTCGCAAAAATAAAGGATTTCTAGTCATCTCTTGTAACTATAACAAAACAAAAAAT
TGGATGGAAAAGTGGAAGATCTGTTGATTGGCTTCCTTGTCTCCGGGGTATCCATTCTTTTCTTAATCTA
TTCTTTTCTTACTATATACCTTGTTTTGACCGTATCGCACTATGTATTATTTGATAACCCAAGAAATCCT
TATGCTTTTGATTCAAGTATCATTTCAAATGGAGGAATTACAAGGATATTTAGAAATAGACGGATCTCGA
CAACAATGCTTCCTATATCCACTTTTCTTTCAGGAGTATATCTATGCACTTGCTCATGATCATGGTTTAA
ATGGATCGATTCTTTACAAACCCATGGAAATTTTCGGTTATGACAATAAATTCAGTTCACTAATTGGGAA
ACGTTTAATTACTCGAATGCATCAACAGAATCATTTGATTCTTTCGGTTAAAGATTCTAAACAAAATCTA
TTTGTTGTTCCCAACAAATATTTTGATTCTCAAATGATGTCAGAGGTTTTTGCAGTCATTGTGGAAATTC
CATTCTCACTACGATTAGTATCTTCCCTAGAAGAAAAAAAAATAGCAAAATCTCATATACGATCTATTCA
ATCTATTCATTCAATATTTCTTTTTTTCGAGGACAAATTTTCACATTTAAATCATGTGTCAGATATACTA
ATACCCCACCCTATACATCTGGAAATCTTGGTTCAAACCCTTCGCTGCTGGATACAAGATGCTCCCTCTT
TGCATTTATTGAGATTTTTTCTCTACGAGTCTCGTAATTCGAATAGTCTCATTATTCCAAAGAAATCCAT
TTCCTTTTTTTCAAAAAGGAATCAAAGATTCTTCTTGTTCCTATATAATTCTCATATATATGGATGCGAA
TCCATATTCGTTTTTCTCCGTAAACAATCCTCTCATTTACGATCAACATCTTCGAGAACCCTTCTTGAGC
GAACACATTTATATGGAAAAATAGAACATTTTTTAGTAGTGCTTCGTAATGATTTTCAGAGGACACTATG
GTTGTTCAAGGATCCTTTCATGCATTATGTCAGATATCAAGGAAAAGCGATTATGGCTTCAAAAGGGACT
CATTTTCTGATGAAGAAATGGAAATATCACCTTGTCAATTTATGGCAATGTCATTTTTACTTGTGGTCTC
AACCTGACAGTATCCATATAAACCAATTATACAATCATTCTTTCTACTTTCTGGGCTATCTTTCACGTGT
ACAACTAAACCCTTCGGTAGTAAGGAGTCAAATGCTAGAGAATTTATTTATAATAGATACTGCTATTAAT
AAATTCGAGACTATAGTCCCAATGATTCCTCTAATTAGATCATTGGCTAAAGCGAAATTTTGTAACGTAT
CAGGGCATCCCATTAGTAAGCCGGCCCGGGCCGATTCATCTGATTCTGATATTATTGATAGATTTGGGCG
TATATGTAGAAATCTTTTTCATTATCACAGTGGATCCTTAAAAAAACAGAGTTTGTATCGAATAAAGTAT
ATACTTCGACTTTCGTGTGCTAGAACTTTGGCTCGTAAACATAAAAGTAAGGTACGCGCTTTTTTGAAAA
GATTAGGTTCGGGATTCTTCCAAGAATTCCTTACGGAAGAAGAACAAGTTCTTTCTTTGATCTTCCCAAG
AACCTATTCCACTTCTCATAGGTCACATAGCGAACGGATTTGGTATTTGGATATTATCCGTATCAATGAC
CTGGCCAATCATGAATGATTCATCATGAGACCATGTAAATAGAAATGATCCCTAAATGATGAAAAGAGAA
AATAACAAAAAATTTGCATTCATTTAAATACTGAAATGCTTATGCAGTAGTGGTTTACTCGGCTGAGTAT
TCAAGTTTATTAGAGTTCCTTCTAGGGAACTGAGTTTTAGATGTATACATAGGGAAAGCCGTGTGCAATG
AAAAATGCAAGCACGGTTTGGGGAGGGATCTTTTTCTACTATTACAAACAAGGAAATTATCGACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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