The detailed information of tRNA gene sequence


Sequence ID>CHL090800246
Genome IDDQ887677
Search identical group
Phylum/ClassViridiplantae
SpeciesPiper cenocladum
Start position on genome 4261
End posion on genome 1651
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
atacatataT
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATtt
Downstream region at tRNA end position 
ctgtacggaa
Secondary structure (Cloverleaf model)
>CHL090800246	Lys	TTT
                   T      ATtt ctgtacggaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2537 (in A-loop)
GTGCGACTATGATCTTTTACACATTTGGATGAAGCAACATATTTGTACATACTATTAGTAAAGTTTGTAA
GACCACGACTGATCCTGAAGGGGATGAATGGAAAAAACAGCATGTCGTTTCAATGGAGAATTATAAGAAT
ACCCCATTCTTAATCCTCACTAGACCGGATCATTACAAAATCTTGTTTTGATTCTTGGAAGGGGATCAGA
TCAATTCATCATTGGGTTTTTTTCAATAAATGGATAGAGCTCTAAAGCTCAAATTATAGGGAAACCCGAA
GTAACGAGCTTTTTCTCTTAATTCGAATAATTGCCCGGTCTAATTAGAGGTTAAAAATATATTAGTGTCT
GATGCGGAAAAGGGGGGTTCTCCCGCGAGTGAATCATCGATTCCCTTTTTTGAATCCTAATTATTCATTA
TTCTCTCATTTTTGAGATTCTTATGGGAAAGGCAATGTGTAGAAGAAACGGTATACTGAGAAAAAAAAAA
ATAAATTCCAAAATCAAAAGAGCGATAGGATTGCAAAAATAAAGGATTTCTAACCACTCCCTGTAATTGG
AACGAAAGGTGGGATAGAAGAAAAGGGAAGATCCGTCGATTGGCCTACTTATCTTCGAGGTATTCCTTCC
TTTCTTACTGGATACCCCGTTTTGACCGTATCGCACTATGTATCATTTCTTAATCTAAGAAATCTTCCAC
ACTTTTTGGTCATTTCAAATGGAAAAATTCAAAAGATATTTAGAAACATTTAGATCTGAGCAAAAGTACT
TCCTGTATCCACTTCTTTTTCAGGAATATATCTACGCACTCGGCCATGATCATGGTTTAAATGGACCGAT
TCCTTACGAATCCATAGAAAATTTAGGTTATGGCGATAAATCTAGTTCACTAATTGTGAAACGTTTAATT
ATTCGAATGCATAAACAGAATCATTTTCTTATTTCTTGTAATGAAAATGATTTTCAACAAAATCGATTGT
TGGGGCGAAAAAACAATTTGGATTCGAAAATTATATCGGAGGCTTTTTCAATTATTGTGGAAATTCCATT
CTCCTTCCAATTAGTGTCTTGCCTAGAAAAAAAAAGAGAAATAGCAAAATCTCATAATTTACGATCTATC
CATTCAATATTTCCCTTTTTTGAGGACAATATATTCTATTTATATCATATATCGGATGTATTAATACCGT
ACCCTATTCATCCAGAAATTTTAGTTCAAACCCTTCGTTACTGGATACAAGACGTTCCCTCTTTGCATTT
ATTGCGAATCTTTTTATACGAGTATTGTCATTCGGGCAGTTTCATTAGCAAAAAAAAATTCTTTTCTTTT
TCAAAAAAAGAAAATGAAAGATTATCCTTATTCATATATAATTCTTATGTATATGAATGGGAATCCATAT
TTCTTTTTATCCGTAAACAATCTTCTCATTTACGATCAATATCCTGGGAAGCCCTTCTTGAACGAGTCCA
TTTCTATGGGAAAATAGAACATCTTGTAGTAGTGCTTTGTAATGATTTTCAGAAGGCTTTGTGGGTATTC
AAAGATTGTTTCATGCATTATGTTAGGTATCAGGGAAAATCCCTTTTGATTTCAAAGGGAACTGATCTTT
TGATGAAGAAATGGAAATATCACTTTATCTATTTATGGCAATGTAATTTTCACTTGTGGTCTCAACCGCA
CAGGATCCATATAAACCAATTAGATAATCGTTCCTTTCATTTTTTGGGTTATGCTTCAAGTGTACGAATA
AATCTTTCGGTGGTAAAAAGTCAAATTCTAGAGAATTCATTTCTAATGGAGACTTCCGTTAAGAAATTCG
AAACCACAGTCCCAATTATTTCTCTCATTGGTTCATTGTCAAAAGAAAAATTTTGTAATCTATCGGGGCA
TCCCACTAGTAAGGCAATTTGGGCGGATTCGTCAGATTCTGATATTATGGAACGATTTGGGCGCGTATGC
AGAAATCTTTCTCATTATTACAGTGGATGTTCAAAAAAACAAATTTTGTATCGAATCAAGTATATACTTC
GACTTTCTTGTGCTAGAACTTTGGCTCGTAAACATAAAAGTACGGTACGCGTCTTTCTGAAAAGATTAGG
TTCGGGATTTTTGAAGGAATTCCTTGCCGAAGAGGAACAAGTTCTTTCATTTTTCTTCCCAAGATCCTAC
CCTACTTCGTATAGGTCAAATAAAGATAAAGAACGGATTTGGTATTTGGATATTACCCATACAAATGACT
TGGCCAATCATGAATGATTGGTCATAAGACTCCATTAATTTAATAGGAATACTCAAATGAAGTAAGAAAA
TAAAAAAAAATGAGTATTATCGTTTTTTTTATTTTCATTCTGAAATGTTGATACGGTGTAGTAGTAGTGC
TTGAATTCATTGATTATTCAAGTGTCTTGAAACTCATCTAGGGGATGGGTTTTTGATGTATACATAGGTA
AAGCCGCGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATCCCTTCGACCCTTGTTACAAGGGCAG
GAATTTTTCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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