The detailed information of tRNA gene sequence


Sequence ID>CHL090800249
Genome IDDQ897681
Search identical group
Phylum/ClassViridiplantae
SpeciesPelargonium x hortorum
Start position on genome 4969
End posion on genome 2335
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttttttgggg
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCACga
Downstream region at tRNA end position 
tctaattgta
Secondary structure (Cloverleaf model)
>CHL090800249	Lys	TTT
                   g      ACga tctaattgta
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2562 (in A-loop)
GTGCGGCTAGCATCTTTTACACATTTTTATGAAGCAAGGGATTCGTCCATACCATCGGTAGGGTTTGTAA
GACCGCGACTGATCCTGAAAGGAATGAGTGGAAAAAACAGCATGTCGTGTCTATCAAGAGAGAATTTTGC
AAATCTTTTCCATTCCGCGGATTGCTACAAAATCTTCTTTCCATTTTGAAAAAAAAAAAAAGAAAATTTT
TGATAGTTGGGTCGAGTGAATAGATGGGTAGAGTCCAGTGGTCCAAATCTAATTTTAGATAAACAAAAAG
CAACGAGCTTCTGTTCTTTATTTGAATGATTACCTGATCTAATGAAAGGTTAAAAAGAGATTAGTACCTG
GGGGTAGCTTTTCCGATCAGTGGATTATCGGTTTTTTATGAGTCCTAACTATTAGCTAGTCCCATTCGAT
TAGGGGTTGGTGATGAATGTGTAGAAGAAGCAGTATATTGATAAAGCTATTTCTTTTTTCCAAAATCAAA
AGAGCGATTGAGTTGAAAAAATAAAGGAGTTCTAACCATCTTGTTATCCTACAATAAAGAGAAACTAATG
AAAGGAAAAGGGAGAGGATAGAGAATCCGTTGATGAGTCCAATTGTTTCCGAGGTACCTTTTTTTTTTCT
TTTTTTATTTACTAGACTACCTTTGTTTTGACTGTATCGCACTATGTATCATTTGATAACCCAAGAAATT
CCCCACTTTTGGTTCAATTCAAATTGAGTTGCAAATGGAAGAATTTCAAGGATATTTAGAACTCGATAGA
TCGAGGCAACATGATTTTCTATACCCACTTATCTTTCGGGAGTATATTTATGGACTTGCGCATGGTCATG
GTTTAAATAGAAGTGGATTCCTTTTGTTGGACAATGTTGATTATGACAATAAATATAGTTTTCTGATTGT
GAAACGTTTAATTGCTCGAATGTATCAACAGAACCACTTTCACATTTGCGAAAATGATTCTGCCCTAAAT
CAATTTATTGGGCACAATAAGAATTTGTATTCTCAAATGATATCAGAAGGATTTGCAGACATTGTGGAAA
TTTCACTTTTTATACAACTAGTATCTTACTTAGACGGGAAAGCAACATCAAAATCTCTTAATTTACGATC
AATTCATTCAATCTTTCCCTTTTTAGAGGATGAATGTTCTCATTTAAATTATGCGTCAGATATACTAATA
CCCCACCCTACCCATCTGGAAATACTAGTTGAAGTTCTTCGTTATTCGGTGAAAGATGCCTCTTTCCTGC
ATTTTTTAAGGTTCCTTCTTTACGAGTATTGGAGTTGGAAGAGTCTTTCTATAAAAAAAAAAGCGAGTTC
CATTGTGTCAAAAAAAAATGAAAGATTCTTCGTCTTCCTATATAATTCTCATGTATGTGAATACGAATCT
ATCCTCCTTTTTCTTCGCAATCAATCTTCTCATTTACGATCAACATCTTTTGGAATCCTTCTTGAGCGAA
TTTTTTTCTATAAAAAAATTGGAGGTCTTGTAGCTATCTTTGGGACTCCTTTTGAGCATATTCATATTTT
GCGGTTTTTAAAGGACCCCTTAATCCATTATGTTAGATACCAAGGAAAATCCATTCTGATTTCAAAAGAC
CGGCCCCTTTTGATGAATAAATGGAAATATTATCTTGTCAAGTTATGGCAATGTCATTTTTATGTATGGT
CTCAACCAGGAAGGATCCACATAAACCAATTATCCCAACATTCCCTACACCTTCTAGGCTATCTTTTAAG
CGTAGGAACAAATCCTTTGGTAGTACGGAGTCAAGTATTCGACAATTCATTTCTAATAGATAATGCTATG
AATAAGTTAGAAACAAGAATTCCCCTTTTTTCTCTAATTGGATCCTTGACTAAAGCGCAATTTTGTAATC
CGTTAGGGCAGCCCATCAGTAAGTCCACTTGGGCCGATTCATCCGATTCTGATATTATTGACCGATTTGT
GCGTATGTGCAGAAATCTTTCTCATTATTACAGCGGGTCTTCAAAAAAACAGAGTTTGTATCGACTCAAA
TATATACTTCGACTTTCTTGTGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGTGCTTTTTTGA
AAAAATTAGGTTCGGAATTATTGGAAGAATTTATTAAGGAGGAAGAACAAGTCCTTTCTTTGCTCTTTCC
AAGAGCCCTTTCTGCTTCGAGGAGGTTATCTACAGGGCGGATTTGGTATTTTGATATTCTTTGTATCAAC
GATTTGGCCAATCATGAATGATTGAGGGCCTTATTAGACAATGTAGGTGGGGATTCTTCTTTCAATTATG
ATAAAGATCAAGGATGAATAGATAAGAAAGAAATACATTCTTCTATTCAGTCATTTCTATTATGAAAAGT
TTATTAAGAGCTAAAGTCAAACTTTCTTATTATTAGTTGAGTCTTCCACAGTCCTGTCTAGGGAAGAAAC
TTAATTTTCTGTGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATT
TTTTACCTAACTCACTTTTAGAAAGGAAATTTTCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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