The detailed information of tRNA gene sequence


Sequence ID>CHL090800259
Genome IDDQ899947
Search identical group
Phylum/ClassViridiplantae
SpeciesLiriodendron tulipifera
Start position on genome 4396
End posion on genome 1839
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
atacggatac
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAttt
Downstream region at tRNA end position 
cattaccata
Secondary structure (Cloverleaf model)
>CHL090800259	Lys	TTT
                   c      Attt cattaccata
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2486 (in A-loop)
GTGCGGCTAGGATCTTTTACACATTTGGATGAAGCAACGGATTCGTCCATACCATTGGTATGGTTTGTAA
AACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAACAGCATGTCGTATCAATGGAGAACTCTGAGAA
TACTTCATCCTTACTGGGTCGGTAGAAAATATTGTTTTGATTCTTGGAACGGTACCAAATCAATTCCCAG
TTGGGTCGAGTGAATAAATGGATAGAGCCCTAATGGCTCCAATTATAAGGAAACCAAAAGCAACGAGCTC
GGTTCATAATTCAAATGATTACCCGATCTAATTAGACGTTAAAAATAGATTAGTGCCTGATGCGGGAAAG
GGTTCTCCTGTGAGTGGATCATCGATTCCTTTTTTTTTTCATGAATCCTAACTATTCTTTCTCTATTATG
GAGTGGAGACGAATGTGTAGAAGAAACGGTATACTGATAAAGAGAATTTATTCCAAAGTCAAAAGAGCGA
TCGGGTTGCAAAAATAAAGGATTTCTAACCATCTCTTGTAACTATAACGAACACAAACAAATTGGATGGA
AAGAGAGAGGATCCGTTGATTGGACTCCCTGTCTCCGGGGTATCTATTCTTTTCTTACTATATACCTTGT
TCTGACCGTATCGCACTATGTATCATTTGATAACCCAAGAAATCCCCTGTGCCTTTGTATAATTTCAAAT
GGAGGAATTACAAGGATATTTAGAAATAGATAGATCTAGGCAACAACACTTCCTATATCCGCTTCTATTT
CAGGAGTATATCTACGCACTTGCCCATGATCATGGTTTAAATGGATCGATTTTTTACGAACCTATGGAAA
ATTTAGGTTATGACAATAAATCCAGTTCACTAATTGTGAAACGTTTAATTACTCGAATGCATCAACAGAA
TCATTTGATTATTTCGGTTAATGATTCCAACGAAAATGGATTCGTTGGGCACAACAAGAGTTTTTATTCT
CAAATGGTATCAGAGGGTTTTGCAGTCATTATGGAAATTCCATTCTCGCTGCGATTAGTATCTTCCCTAG
AAGAAAAAGAAATAGCAAAATCTCATAATTTACGATCTATTCATTCAATATTTCCCTTTTTCGAGGACAA
ATTATCACATTTAAATCATGTGTCAGATATACTAATACCTCATCCCATCCATCTGGAAATCTTGGTTCAA
ACCCTTCACTGCTGGATACAAGATGCCCCCTCTTTGCATTTATTGCGATTCTTTCTCCACGAGTATCGTA
ATTCGAATAGTCTCATTACTCCAAAGAAATCCATTTCTCTTTTTTCAAAAGAGAATCAAAGATTCTTCTT
GTTCCTATATAATTCTCATGTATATGAATGTGAATCCGTATTAGTGTTTCTCCGTAAACAATCTTCTCAT
TTACGATCAACATCCTCTGGAACTTTTCTTGAGCGAACACATTTCTATGGAAAAATAGAACATCTTGTAG
TAGTGCTTCGTAATGATTTTCAGAAGACCCTATGGTTGTTCAAGGACCCTTTCATGCATTATGTCAGATA
TCAAGGAAAATACATTCTAGCTTCAAAGGGGACTCATCTTCTGATGAAGAAATGGAAATCTCACCTTGTC
AATTTTTGGCAATGTCATTTTTACTTGTGGTCTCGACCGGACAGGATCCATATAAACCAATTATACAATC
ATTCCTTCTATTTTCTGGGCTATCTTTCAAGTGTACGACTAAACACTTCGGCGGTAAGGATTCAAATGCT
AGAGAATTCATTTCTAATAGATACTTCTATTAATAAATTCGAGACCCTAGTCCCAATTATTTCTCTGATT
GGATCAGTGGCTAAAGCGAAATTTTGTAACGTATCAGGGCATCCCATTAGTAAGTCGGTCCGGGCCGATT
CGTCAGATTCTGATATTATAAATCGATTTGGGCGGATATACAGAAATCTTTCTCATTATCACAGTGGATC
CTCAAAAAAACAGACTTTGTATCGAATAAAGTATATACTTCGACTTTCGTGTGCTAGAACTTTGGCTCGT
AAACATAAAAGTACGGTACGCGCTTTTTTGAAACGATTAGGTTCGGAATTCTTGGAGGAATTCCTTACAG
AGGAAGAACAAGTTCTTTCTTTGATTTTCCAAAGAAACTCTTTTCCTTCTTATAGGTCACATAGAGAACG
GATTTGGTATTTGGATATTATCCGTATCAATGACCTGGCCAATCATTCATGATTGGTCACGGGATCATGT
AAATGGAAATGATCCATAAATGATGAAGGGATAAAATAACAAAACCAAAAAGTGCATTCTTTAAAATCTG
AAATGCTCATGCTGTAGTGTAGTGGTTGATTAAGTATTCAAGTTTCTTAGAGTCCCTTCTAGGGATCTGA
GTTTTAGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATATTT
TTTCCCCTATTGCAACAAGGAAATTATCTACTCTAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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