The detailed information of tRNA gene sequence


Sequence ID>CHL090800261
Genome IDDQ923116
Search identical group
Phylum/ClassViridiplantae
SpeciesPlatanus occidentalis
Start position on genome 4487
End posion on genome 1916
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
taattatttg
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAtta
Downstream region at tRNA end position 
tgatatggat
Secondary structure (Cloverleaf model)
>CHL090800261	Lys	TTT
                   g      Atta tgatatggat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2500 (in A-loop)
GTGCGGCTAGGATCTTTTACACATTTGGATGAAGCAACGGATTCGTCCATACCATTGGTAAAGTTTGTAA
GACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAGCAGCATGTCGTATCAATGGAGAACTCTGAGAA
TACTTCATCTTTGCCGGATCGGTACAAATAATTTTTTTGAATTCTTGGAACGGGACAAAATCAATTCAAA
GTTGGGTTGAGTGAATAAATGGATAGAGCCCCATGGCTCCAATTATAGGGAAATGAAAAGCAACGAGCTT
CTGTTCTTAATTCGAACAATTACCCGGTCTAATTAGACGTTAAAAATATATTAGTGCCTGATGCGGGAAA
AGGTTCTCATGTGAGTGGATTGTCGATTTTTTTAATGAATCCTAACTATTCTCCATTCTGGGGTGGAGAC
GAATGTGTAGAAGAAACGGTATATTGATAAAGGTGTTTTATTCCAAAATCAAAAGAGTGATCAGGTTGCA
AAAATAAAGGATTTCTAATTCTCTCGGTATCCTATAACGAATACAAACCAATTGGATCGAAAAAGAGAGG
ATAGAGGGTCCGTTGATTAGCCTACTTGTCTCCGAGGTATCTATTCTTTTCTTACTATATACCTTGTTTT
GACTGTATCGCACTATGTATCATTTGATAACCCAAGAAACCCCGGCCTTTGTTTCAAATCTAAATTCAAA
TGGAAGAATTACAAGGATATTTAGAAATAGATAGATCTCGGCAACAAGACTTCCTATATCCACTTCTCTT
TCAGGAGTATATTTATGCACTTGCTCATGATCATAGTTTAAATAGATCGATTCTTTATGAACCCATGGAA
AATTTAGGTTATGATAATAAATCCAGTTCACTAATTGTGAAACGTTTCATTACTCGAATGTATCAACAGA
ATCATTTAATTATTTCGGCTAATGATTCTAATCAAAATAAATTTGTTGGGCACAACAAAAATTTGGATTC
TCAAACAATATCAGAGGGGTTTGCAATCATTGTGGAAATTCCATTCTCCCTGCGATTAGTATCTTCCCTA
GAAGGGCTAGAAGGGAAAGGAAAAGAAATAGTAAAATCTCGTAATTTACGATCAATTCATTCAATATTTT
CTTTTTTAGAGGACAAATTATCACATTTAAATTATGTGTCAGATATACTAATACCCCATCCCATCCATCC
GGAAATCTTAGTTCAAGTCCTTCGCAGTTGGGTACAAGATGCCCCTTCTTTGCATTTATTGCGACTCTTT
CTCCACGAATATCGTAATTGGACTAGTCTTATTACTCCAAAGAAATCCATTTCCATTTTTTCAAAAGAGA
ATCAAAGATTCTTTTTGTTCCTATATAATTTTCATATATGTGAATGCGAATCCATATTCGTTTTTCTCCG
TAAACAATCTTCTCATTTACGATCAACATCTTTTAGAGCCCTTCTTGAGCGAACACATTTCTATGGAAAA
ATGGAACATTTTGTAGTAGTGTTTCGTAATAATTTTCAAACCATCCTATGGTTAGTTAAGGATCCTTTCA
TGCATTATGTCAGATATCAAGGAAAATCCTTTTTGGCTTCAAAGGGGACTCCTCTTTTAATGAATAAATG
GAAATATTATCTTGTCAATTTTTGGCAATATTATTTTTATTTGTGGTCTCAACCGAGTAGGATCCATATA
AACCAATTATCCAATCATTCCCTCGACTTTCTGGGTTATCTTTCAAGTGTACGACTAAATCCTTCAGTGG
TAAGTAGTCAAATGCTAGAAAATTTATATCTAATGGATATTGCTATTAAGAAGTTCGATACCATAATCCC
GATTATTCCTCTGATTGGATCATTGGCTAAAGCGAAATTTTGTAACGTATCAGGGCATCCCGTTAGTAAG
CCGGTCCGGGCCGATTCATCCGATTCTGATATTATCGATCGATTTGGGCGGATATGCAAAAATCTTTCTC
ATTATCACAGTGGGTCCTCAAAAAAAAAGAGTTTGTATCGAATAAAGTATATACTTCGACTTTCGTGTGC
TAGAACTTTAGCTCGTAAACATAAAAGTACTGTACGTGCTTTTTTGAAAAGATTAGGTTCGGAATTATTG
GAAGAATTCTTTACGGAGGAGGAACAAGTTCTTTCTTTGATCTTCCCAAGAACCTCTTCCCCTTCGCGGA
GATTATATAGAAAACAGATTTGGTATTTGGATATTATTCGTATCAATGATTTGGCCAATCATGAATGATT
GGTTATGAGACCGTGTAAATGGATAAATGGAAATGATTCCTTATTTAAAAAGGAATAACAAAATAATTTC
ATTCATTTCAATTCTGAAATGCTCATGCAGTAATGGTTGAATCAACTGGGTATTCAACTTTCTTAGAGTC
CTGTCAGGGAACTGAGCTTTAGATGTATACATAGAGAAAGCCGTGTGCAATGAAAGATGCAAGCACGGTT
TGGGGAGGGATTTTTTTCTCCTATTTCAACAAGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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