The detailed information of tRNA gene sequence


Sequence ID>CHL090800265
Genome IDEF044213
Search identical group
Phylum/ClassViridiplantae
SpeciesCoffea arabica
Start position on genome 4148
End posion on genome 1607
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tttattcttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACtg
Downstream region at tRNA end position 
ttatattcaa
Secondary structure (Cloverleaf model)
>CHL090800265	Lys	TTT
                   c      ACtg ttatattcaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2469 (in A-loop)
GTGCGGCTAGCATCTTTTACACATTTAGATGAAGCAGGGGATTCATCTATACCATCGGTAAAGTTTGAAA
GACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAACAGCATGTCGGATTGAGGGAGAGTTCTGAGAA
TGTTTCATTTTTACCGGATCAGTAGAAAAGAAAAACCCGGTTCGAATTCTTGGAATGGAAGAAAATAAAG
TTGGGTTGAATGAATAAATGGATAGGGCCTCGCGGCTTCAATTAATTATAGGGAAAGATAAAGAAACGAG
CTTCTGCTCTGAATTTGGAATAATTTCCTGATCTAATTAGACGTTAAAAATATATTAGTGCCCGGTGCAG
GAAAGCTTTCACTCCCATGAGTGAATTCTCAATTTTTCAACGAATCCTAACTATTCTAACTCTCCATTAT
GAAACGGAGATGTGTGTGTAGAAGAAACAGTATATTGATAAAGAAAATTTTTCCGAAATCAAAAGAGCGA
TTGGGTTGAAAAAATAAAAGATTTCTAACCATCTTGTTATACTATAACATAGACTAAAAATGACTAAAAA
TGTAAAAAAGAGAGGATAGAGAATCTGTTTATAAGTTTATACTCGCCCCGAGGTATCTTTTATTACTAAA
ATACTTTGTTTTGACTGTATCGCACTATGTATCATTTGATAACCCCCAAATCTTCTACCTTTGGTTCAAA
TTAAAATCAAATGGAGGAAATTCAAGGATATTTACAGCTTGATAGATCTCAACAACACGGCTTTCTATAT
CCACTTATCTTTCAGGAGTATATTTATGCACTTGCTCATGATCATAGTTTAAACCGATCGATTTTGTTAG
AAAATCCAGTTTATGATAATAAATCCAGTTTCCTAATTGTGAAACGTTTAATTACTCGAATTTATCAACA
AAATCATTTTATTATTTTTGCTAATAATTCTAATCAAAATCTATTTTTTGGTCACAACAAGAATTTATAT
TCTCAAACAATATCAGAAGGACTTGCATTTATTGTGGAAATTCCATTTTATATACGATTAATATCTTCTC
AAGGGGGGAAAGGGATATTAAAATTTCGTAATTTACGATCAATTCATTCACCATTTCCTTTCTTAGAGAA
CAATTTTTCACATTTAAATTCTGTGTTAGATATACTAATACCCCATCCCGTACATCTGGAAATCTTGGTT
CAAAACCTTCGTTATTGGGTAAAAGACGCCTCCTCCTTGCATTTATTACGATTCTTTTTCCACGAATATT
GGAATTGGAATACTCTTATTGATAGAAAGAAACCCAGTTTTGATTTTTCACCAAAAAGAAATCAAAAATT
ATTCTTCTTGTTATATAATTCTCATGTATGTGAATACGAATCCATTTTCTTCTTTCTCCGTAAGCAATCT
TCTCATTTGCGATCAACATCTTTTGGAGTCTTTCTTGAACGGATATATTTCTATGAAAAAAAAGAACGTC
TTGTAGAAGTCTTTGCTAAGGATTTTCAAGCCAGTCTATGGTTGTTCAAAGATCCTTTCATACATTATGT
TAGGTATCAAGGAAAATCCATTCTGGTTTCAAATGGGACGCCTCTTTTGATGAATAAATGGAAATCTTAC
CTTGTTAATTTTTGGCAATGTCATTTTGGTATTTGGTTTCACCCGGGAAGGGTCTATATAAACCAATTAC
CCAATTATTCCTTTAACTTTATGGGCTATCTTTCAAGTGTGCGACTAAACCATTCAATGGTACGAAGTCA
AATGCTAGAAAATGCATTTCTAATCAATAATGCTATTAAGAAATTTGATACCCTTGTTCCACTTATTCCC
CTTATTGGATCATTGGCTAAAGCGAAATTTTGTAACTTATTAGGACATCCTATTAGTAAGCCGATTTGGA
CTGATTTGGCAGATTCTGATATTATTGACCGATTTTGGCATATATGCAGAAACCTTTCTCATTATTATAG
CGGATCTTCCAAAAAAAAGAGTTTGTATCGAATAAAATATATACTTCGACTTTCTTGTGCTAAAACTTTG
GCTCGGAAACACAAAAGTACTGTGCGTGCTTTTTTGAAAGGATTAGGCTCGGAATTTTTGGAAAAATTCC
TCACGTCGGAAGAAGAAGCTCTTTCTTTGACCTTCTCAAGAACTTCTTCTACTTTTCGGGGGGTATATAG
AAATCGAATTTGGTATTTGGATATTATTTATATCAATGATCTGACCAATTATCAATGATTTATCCTGAGG
TCTTGTAAATGCCAATTTTCCTAAGAGATAATAAAAATTTTTACTTCTACTATTTTGAAATGTTAATGTA
ATAAGGGTTAAATCAACCGATTATTCTTTAAATTAAAGTTTTTCTAAAAAAAAAGAACTGATGTATACAT
AGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGGGATGTTTACTTTTTTAATTTAACA
AAGAAAATTTCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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