The detailed information of tRNA gene sequence


Sequence ID>CHL090800272
Genome IDEF115541
Search identical group
Phylum/ClassViridiplantae
SpeciesHordeum vulgare subsp. vulgare
Start position on genome 4461
End posion on genome 1909
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttttttatcT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATat
Downstream region at tRNA end position 
agaaaagacc
Secondary structure (Cloverleaf model)
>CHL090800272	Lys	TTT
                   T      ATat agaaaagacc
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2479 (in A-loop)
GTGCGACTATGATCTTTTACACATTTGGATGAAACAACAAATTCGTCCAGACTCTTGGTAGAGTCTAGAA
GACCACGACTGATCCTCAAAGGTAATGAATGGAAAAAATAGCATGTCGTAATAAAATCAATCTTTTTTGA
ATGGAATCCAAAATTACGATTTTCTGGGTCTAGTGAATAAATGGATAGAGCCTGGCTCCAATTCTGGTAA
AATAAAAAGCAACGAGCTTAACTTCCTAATTGGAAGGATTCCCCGCTCTAATTAGACGTTAAAAATAGAT
TAGTGCCGGATGTGGGGAAAGGTTGGGTTTTCCTATGAGTGGACCCTTTATTTTTTCTTTTTTTTTAGAA
ATCCTAATTATTCTTGATTATGGATTGAATAAGGGATGTTATGGATTGAATGTGTAAAAGAAGCAGTATA
TTGATAAAGAGGCTGTATTCCAAAGTCAAAAGAGCGATTGGCCTGCAAAAATAAAAAACTTGTTCTGTTC
TTTTTTGTAATTTAGAACAAACATAAACTAATTCGGTAGAAAAGGAGCGGAAAAAGATCCGTGGATTAGA
CTCCCTTTCTTTCCAGGGTTTGTATTAAAAATGCAACACCCTGTTCTGACCATATTGCACTATGTATCAT
CATTCGATAAACCGAGAAATGCTTCTTCTCTCTGATTCAAGTAGAAATACAAATGGAAAAATTCGAAGGG
TATTCAGAAAAACAGAAATCTCGTCAACAATACTTTGTCTACCCACTTCTCTTTCAGGAGTATATTTATG
CATTTGCTCATGATTATGGATTAAACGGTTCTGAACCTGTGGAAATAGTTAGTTGGAATAACAAGAAATT
TAGTTCACTACTTGTGAAACGTTTAATTATTCGAATGTATCAGCAGAATTTTTTGGATAACTCGGTTAAT
CATCCTAATCAAGATCGATTATTGGATTACAAAATTTTTTTTTATTCTGAGTTTTATTCTCAGATTCTAT
CTGAGGGGTTTGCGATTGTTGTGGAAATCCCATTCTCGCTACGGGAATTATCTTGTCCGAAAGAAAAAGA
AATACCAAAGTTTCAGAATTTACGCTCTATTCATTCAATATTTCCCTTTTTAGAAGACAAATTTTTGCAT
TTGGATTATCTATCACATATAGAAATACCCTATCCTATCCATTTGGAAATCTTGGTTCAACTCCTTCAAT
ACCGTATCCAAGATGTTCCATCTTTGCATTTATTGCGATTCTTTCTCAACTACTATTCGAATTGGAATAG
TTTTATTACTTCAATGAAATCCATTCTTTTTTTTCAAAAAGAAAATAAAAGACTAGTTAAATTCCTATAT
AACTCTTATGTATCAGAATATGAATTTTTCTTGTTGTTTCTTCGTAAACAATCTTCTTGCTTACCATTAG
CATATTCTGGAACTTTTCTGGAACGAATCCACTTTTCTAGGAAGATGGAACATTTTGGGATAATGTACCC
TGGTTTTTCTCGGAAAACCTTATGGTTCTTTATGGATCCTCTTATACATTATGTTCGATATCAAGGAAAG
GCAATTCTTGCATCAAAAGGCAGTTTTTTTTTGAAAAAGAAATGGAAATGCTACCTTATCAATTTCTGGC
AATATTATTTCTTTTTTTGGACTCAGCCGCGAAGAATCCATATAAACCAATTAGCAAACTCTTGCTTCGA
TTTTATGGGATACCTTTCAAGTGTACCAAAAAGTCCTTTGTTGGTAAGGAATCAAATGCTGGAGAATTCA
TTTCTCATAGATACTCGAATGAAAAAATTCGATACCATAGTCCCCGCTACTCTCCTCATAGGATACTTAT
CAAAAGCTCAATTTTGTACTGGATCGGGGCATCCTATTAGTAAACCCATTTGGACGGATTTATCAGATTG
GGATATTCTTGATCGATTTGGTCGGATATGTAGAAATCTTTTTCATTATCATAGTGGATCTTCGAAAAAA
CGGACTTTGTATCGACTAAAGTATATACTTCGACTTTCATGCGCTAGAACTTTAGCTCGTAAACATAAAA
GCACGGTACGAACTTTTATGCAACGATTGGGTTCGGCATTTTTAGAAGAATTTTTTACGGAAGAAGAGCA
AGTTTTTTCTTTGATGTTCACCAAAACAACTCTTTTTTCTTTCAGTGGATCACACACTGAGCGTATTTGG
TATTTGGATATTATAGGTATCAATGACCTGGTCAACCCTCTTAATTAATCATTAGACAAAACTAATAAAC
AGGAAAGGGTTGATAAATGATCAAGAAAAAACTTTCATATTTTTCATTCTGAAATGTTCCTTTTATTATA
ATAAAGAGTAGGTGAATCAACTTACTAATTAAAAAATTAGTAGAACTTCCTCTTTGGAATAGAATATTGG
CTATTTCTACATAGGGAAAGTCGTGTGCAATGAAAAATGCAAGCACGATTTGGGGAGGGATTTTTCTCTA
TTGTAACAAGGAAGAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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