The detailed information of tRNA gene sequence


Sequence ID>CHL090800296
Genome IDEF380351
Search identical group
Phylum/ClassViridiplantae
SpeciesBuxus microphylla
Start position on genome 4193
End posion on genome 1628
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ataattcttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAttt
Downstream region at tRNA end position 
tcatatataa
Secondary structure (Cloverleaf model)
>CHL090800296	Lys	TTT
                   c      Attt tcatatataa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2494 (in A-loop)
GTGCGGCTAGGATCTTTTACACATTTGGATGAAGCAAGGGATTCGTCCATACCCTCGGTAGAGTTTGTAA
GACCACGACTGATCCTGAAAAAGAATGAATGGAAAAAACAGCATGTCGTATTAATGGAGAACTCTGCGAA
GACTTCATTCTCGCTGGATCGATAGAAAATCTTGTTTTAACTCTCGGAACAGGACAAAATCAGTTCACAG
TTGGGTCGAGTGAATAAATGGATAGATCCCCATGGCTCCAATTATAGGGAAACAAAAAGCAACGAGCTTT
CGTTCTTTTCTTAATTTGAATGATTACCCGATCTAATTAGACGTTAAAAATATATTAGTGCCTGATGCGG
GAAAGGGTTCTCCCATGAGTGGAGATTATTAATTTTTTTTTTAATGAATCCTAACTATTAATTATTCTCC
ATTATGATGGAGTAGAGATGAATGTGTAGAAGAAGCGGTATATTGATAAAGATCATTTTTTCCAAAATCA
AAAGAGCGATCGCATTGCAAACATAAAGGATTTCTAACCATCTCGGTATCCTATAACGAACACAAACCAA
TTGGATGGAAAAAGGGAGGATAGAGAATCCGTTTATTAGATTAGTATACCTGTGTTCGAGGTATTCATTT
TTTATTACTATATACCTTGTTTTGATTGTATCGCACTATGTATTTATTTCATAACCCAAGAAATTCCTGT
TAAAATAGAATTTAAAATGAAGGAATTACAAGGATATTTAGAAATATATAGATCTCGTCAACAAGATTTC
CTATATCCACTTCTCTTTCAGGAGTATATTTATGTACTTGCTCACGATCATGGTTTAAATAGATTGATTC
TTTACGAATCTATGGAAAATTTAGGTTATGACAATAAATCCAGTTCATTAGTTGTGAAACGTTTAATTGC
TCGAATGTATCAACAGAATCATTTGATTATTTCGGCTAATAATTCTAACCAAAATAAATTTGTTGGACAC
AACAAGGATTTTTATTCTCAAATGATATTAGAGGGATTTGCGGTCATTGTGGAAATTCCATTTTCACTAC
GATTCGTATCTTCACTAGAAGGGAAAGAAATATTAGAATCTCATAATTTACGATCAATTCATTCAATATT
TCCTTTTTTAGAGGACACATTATCACATTTAAATTATGTGTCAGATATACTAATACCCCACCCCATCCAT
CTGGAAATCTTGGTTCAAAGCCTTCGCTGCTGGGTACAAGATGCCCCTTCTTTGCATTTATTGCGATTCT
TTCTCCACGAGTATCATAATTGGAATAATTTTATTTCTCCAAAGAAATCAATTTTTATTTTTTCAAAAAA
AAATAAAAGATTCTTCTTGTTCCTATATAATTCTTATGTCTATGAATGTGAATCCATATTCGTTTTTCTC
TGTAAACAATCTTCTCATTTACGATCAACATCTTCTGGAGCCCTTCTTGAGCGAACACATTTCTATGTAA
AAATAGAGGATCTTGTAATAGTCTTTCGTAATGATTTTCAGACCATCCTATGGTTGTTCAAGGATCCTTT
GATGCATTATGTCAGATATCAAGGAAAATCAATTCTGGCTTCAAAGGGGACTCCTCTTCTGATGAATAAA
TGGAAATATTACCTTGTAAATTTCTGGCAATGTAATTTTTACTTATGGTCTCAATCAGGCAGGATCCATA
TAAAGCAATTATCCAATCACTCCCTCGATTTTCTGGGTTATCTTTCAAGTGTACGACTAAATCCTTCAGT
GGTAAAGAGTCAAATGCTAGAAAATTCATTTATAATAGATAGTGCTATTAATAAGTTCGATACCATAGTC
CCAATTATTTCTCTGATTGGATCATTGGCTAAAGCGAAATTTTGTAACGTATCAGGGCACCCTATTAGTA
AGCCGGTACGGGCTGATTCATCAGATTCTGATATTATTGACCGATTTGGGCAGATATGCAGAAATCTTTC
TCATTATCACAGTGGATCCTCAAAAAAAACGAGTTTATATCGAATAAAGTATATACTTCGACTTTCGTGT
GCTAGAACTTTGGCTCGTAAACACAAAAGTACTGTACGGGCTTTTTTGAAAAGATTAGGTTTAGAATTAT
TGGAAGAATTCCTTACAGAGGAAGAACACGTTCTTTCTTTGATCTTTCCAAGAGCTTCTTTTATTTTGCG
GAGGTTATATAGAGGGCGGATTTGGTATTTGGATATTATTCGTATCAATGATCTGGCAAATCATCAATGA
TTTGTTATGAGACCATGTAATGTAAATTTTAATTATCCTTAAATGATTAAATGAAGAGATAACAAATGAA
TGAAATTCATTTACATTTTGAAATGCTCATCTCATACAGTAATCAACTGAATATTTAACTTTGGTCCCGT
CTAGGGAACTGAGTTTTATATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGG
GGAGGGATTTTTTCCTATTTCAACAATTAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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