The detailed information of tRNA gene sequence


Sequence ID>CHL090800303
Genome IDEF380352
Search identical group
Phylum/ClassViridiplantae
SpeciesChloranthus spicatus
Start position on genome 4150
End posion on genome 1552
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ctattcatcT
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATtt
Downstream region at tRNA end position 
ccatacggaa
Secondary structure (Cloverleaf model)
>CHL090800303	Lys	TTT
                   T      ATtt ccatacggaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2525 (in A-loop)
GTGCGGCTATTCTTTTTTACACATTTGGATGAAGAAACGGATTCGTCCATACCCATACATTGGTAGAGTT
TGTAAGACCACGACTGATCCTAAAAAAAGGGAATGAATGGAAAAAACAGCATGTCGTATCAATGGAGAAC
TCTGAGAATACTTCATCTTTACCGGATCGGTAAAAACGATTGTTTTGATTCTTGAAAACGGTACCAAATC
AATTCAAAGTTGGGTCGAGTGAATAAATGGATAGAGCCCTTTGGCTCCAATTCCAATTATAGGGAAACAA
AAAGCAACGAGCTTCTGTTCTGAATTTGAATGATTACCCGATCTAATTAGATGTTAAAAATGGATTAGTA
CCAGATGCGGGATAAGGGTTCTCCTGTGAGTGGATCATTGATTCCTTTTTTTTTAATGAATCCTAACTAT
TCACTATTCTCCATTATGGAGTGGAGACGAATGTGTAGAAGAAATGGTATACTGATAAAGATAATTCATT
CCAAAGTCAAAAGAGCGATTGGGTTGCAAAAATAAAGGATTTCTAACCATCTCTTGTAACTATAACCAAT
ACAAACCAATTGGATGGAAAAAAAGAGGATCCCTTGATTGGTCTCCCTGTCTCCGGGGTATCTATTCTTT
CTTACTATATACTTTGTTCTGACCGTATTGCACTATGTATCATTTGAGAATCCAAGAAATCTCTTCCTTT
GGTTCAAGTATAATTTCAAATGGAAGAATTACAAAGATATTTAGAAATTGATAGATCTCGTCAACAACAC
TTCCTATATCCGCTTCTCTTTCAGGAGTATATCTACGTACTTGCTCATGATCATGGTTTAAATGGATCGA
TTCTTTACGAATCCATGGAAAATTTAGGTTATGACAATAAATCCAGTTCACTAATTATCAAACGTTTAAT
TATTCGAATGCATCAACAGAATCATTTGATGATTTCGGTTAATCATTCGAACCAAAATCGATTCCTTGGG
TACAACAAGAATTTTGATTATCAAATGATATCAGAGGGTTTTGCAGTCATTGTGGAAATTCCATTCTCTC
TGCAATTAGTATCTTCTCTAGAAGAAAAAGAAATAGCAAAATTTCATAATTTACGATCTATTCATTCAAT
ACTTCCCTTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTCAGATATCCTAATACCTTACCCCACA
CATCTGGAAATCTTGGTTCAAACCCTTCACCGTTGGATACAAGATGCTCCCTCTTTGCATTTATTGCGAT
TCTTTCTCCACGAGTATACTAATTGGAATAGTTTCATTACTCCAAAGAAATCCATTTATCTTTTTACAAA
AGATTTTACAAAAGAGAATCAAAGATTATTCTTGTTCCTATATAATTCTCATGTATATGAATGCGAATCC
GTATTCATTTTTCTCCGTAAACAGTCTTCTTATTTAGGATCAAAATATTCTGGAGCCTTTATTGAGCGAA
CACATTTCTATGGAAAAATGGAATATCTTGTGGTAGTTCTTCGTAATGATTTTCAGAAAACTCTATGGTT
GTTCAAGGATCCTTTCATGCATTATGTCAGATATCAAGGAAAAGCAATTCTGGCTTCAAAGGGGGCTCAT
CTTCTGATGAAGAAATGGAAATATCACCTTGTCAATTTCTGGCAATGTCATTTTTACTTGTGGTATCAAC
CGGATAGGATCCATATAAACCAATTATCCAATCATTCCTTCTATTTTCTGGGCTATCTTTCAAGTGTACT
CCTAAATCTTTCGGCGGTAAGGAGTCAAATGCTAGAGAATTCATTTCTAATAAATACTGCTATTAAGAAA
TTCGATACCATAGTCCCTATTATTCCTCTGATTGGAGCATTGGCTAAAGCAAAATTTTGTAACATATCAG
GGCATCCCATTAGTAAGCCGGTCCGGGTTGATTCGTCAGATTCTGATATTATCGATCGATTTGGGCGGAT
ATGCAGAAATCTTTCTCACTATCATAGTGGATCTTCAAAAAAACAGAGTTTGTATCGAATAAAGTATATC
CTTCGATTTTCATGTGCTAGAACTTTGGCTCGTAAACATAAAAGCACGGTACGCACTTTTTTGAAAAGAT
TAGGTTCGGAATTGTTGGAAGAATTCCTTACAGAGAAAGAACAAGTTATTTCTTTGATCTTCGCAATAAA
TTCTTCTCCTTCGCATAGGTCATATAGAGAACGGATTTGGTATTTGGATATTCTCTGTATTAATGACCTG
GCCAATCATGAATGATTGGTCATGAGACCTGGTAATGTAAATCGGAATCATTCCTAAATGATGAAGAGAT
AAAATAATAAGAAAATTTCATTCATTTTCATTCTGAAATGCTGATTCAGTTGTGGTTGAATCAACTGAAT
ATTCGAGTTTCTTCGAGTTCCTTCTTCTAGAGAGAACTGAGTTTTGGATGTATACATAGGGAAAGCCGTG
TGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATCTTTTTATCCTATTGCAACAAGGAACTTATCTAC
TCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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