The detailed information of tRNA gene sequence


Sequence ID>CHL090800307
Genome IDEF380354
Search identical group
Phylum/ClassViridiplantae
SpeciesIllicium oligandrum
Start position on genome 4843
End posion on genome 2249
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
acatttatcc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCAtta
Downstream region at tRNA end position 
cattacaata
Secondary structure (Cloverleaf model)
>CHL090800307	Lys	TTT
                   c      Atta cattacaata
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2523 (in A-loop)
GTGCGGCTATGATCTTTTACACATTTGGATGAAACAACAGATTCGTCCATACCATTGGTAGAGTTTGTAA
GACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAACAGCATGTCGTATCAATGGATAACTCTGAGAA
TATCTCATCCTTACTGGATCAGTACAAAATGTTGTTTTGATTCTTTGAACGGAACAAAATTCATTCAAAG
TTGGGTCGAGTGAATAAATGGATAGAGCCATATGGCTCCAATTATAGGGAAACTCAAAGCAACGAGCTTC
TGTTCGATTCTTAATTTGAATGATTACCCGATCTAATTAGACGTTAAAAATATATTAGTACCGGATGCGG
GAAAGGGTTCTCCTGTGAATGGATCATCGATCCCTTTTTTAATGAATCCTAACTATTGACTATGAACTAT
TAGTTACTGGATTGGAGACGAATGTGTAGAAGAAACGGTGTACTGATAAAAAAAAATGCATTCCAAAGTC
AGAAGAGCGATCGGGTTGCAAAAATAAAGGATTTTTAACCATCTTTTGTAACTATACCAAACACGAACGA
ATTGGATGGAAAAAGGGAGGATCCGTTGATTAGTCTCCCCGTCTCCGGGGCATCCATTTTTACTATAGAC
TTTTACTTTGTTCCGACCATATCGCACTATGTATCATTTGATAACCCAAGAAATCTCCCCAGCCTGTGAT
TCAAGTAGAATTTCAAATGGAGGAATTACAAGGATATTTAGGAATAGATAGATCTTGTCAACAACGTTTC
CTATATCCGCTTCTGTTTCAGGAGTCTATCTACGCACTTGCTCATGATTATGGTTTAAATGGATCAATTC
TTTATGAACCCATAGAAAATTTAGGTTATGACAATAAACCCAGTTTACTAATTGTGAAACGTTTAATTAT
TCGAATGCATCAACAGAATCTTTTTTTTATTCTTGTTAATGGTTCTAACCAAAATCGATTCGTTGGGCAC
AACAGGAGTTTTTATTCTCAAATGATATCCGAGGGTTTTGCAGGAATTGTGGAAATTCCACTCTCGATGA
GATTAGCATCTTCCCTAGAACAAATAGCTAAATCTCATAATTTACGATCTATTCATTCAATATTTCCATT
TTTAGAGGACAAATTCTCACATTTAAATCATGTGTCAGATATACTAATACCCCACCCCGTACATCTGGAA
ATCTTGGTTCAAACTCTTCGCCGCTGGATACAAGACGCTCCTTCTTTGCATTTATTGCGATTCTTTCTCC
ACGGGCATCCTAATTGGAATAGTCTCATTACTCCAAAAAAATCCATTTCTCTTTTTTCAAAAGAGAATCC
AAGATTTTTCTTGTTCCTATATAATTCTTATGTATATGAATACGAATCCATCTTAGTTTTCCTCCATAAA
CAATCTTCTCATTTACGATCAATCTCTTCTGGAGCCTTTCTTGAGCGAACAAATTTCTATGGAAAAACAG
AGCATCTTCTAGTAGTGCTTCGTAATGATTTTCAAAAGACCTTATGGTTATGGTTGTTCAAAGATCCTTT
CATGCATTATGCCAGGTATCAAGGAAAAGCCATTATGGCTTCAAAAGGTACTCATCTTCTGATGAAGAAA
TGGAAATATCACCTTGTCAATTTCTGGCAATTGCATTTTTACTTGTGGTCTCAATCGGGCAGGATCCGTA
TAAATGAATTATCCAATCATTTCTTCTATTTTCCGGGCTATCTTTCAGGCATACGACTAAACCCTTCGGT
AGTAAGGGGTCAAATGATAGAGAATTCATTTATGATAGATACTGGTATTAAGAAATTCGATATGATAGTC
CCAATTATTCCTTTGATTGGATCATTGGTTAAAGCAAAATTCTGTAACATATCTGGGTATCCCATTAGTA
AGTCGGTTCGGGCTGATTCGTCAAATTCTGATATTATCAATCGATTTGGGCGAATATGCAGAAATCTTTC
TCATTATCATAGTGGATCCTCAAAAAAACACAATTTGTATCGAATAAAGTATATACTTCGACTTTCGTGT
GCTAAAACTTTGGCTCGTAAACATAAAAGTACGGTACGCACAATTTTGAAAAGATTAGGTTCAGAACTAT
TGGAAGAGTTCCTTACGGAAAAAGAAGAAATTCTTTCTTTGATCTCCCCAAGAACCTCTTCCCCTCCCCA
TAGGGAAGAAGGGATTTGGTATTTGGATATTATCCATATCCATGGCATGTCCAATCATTCATGATTGGAC
ATGGGACCATTAAATAGAAATGATCCATAACTGCTGAAGAGATTCAATAATAAAAGAAACAAATCTCATC
GATTTCCATATTATTTTTAATATGGAAATGCCCATCCACATCCAGTAGTGATTGAATCCGTTGAGTATTC
AAGTTTCGTGGAGTTTTCTCTTTCTCTCTAGGGAACTGAGTTTTCGATGTATACATAGGGAAAGCCGTGT
GCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTATCCTATTGGAATAAAGAGATTATCTACTC
CAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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