The detailed information of tRNA gene sequence


Sequence ID>CHL090800312
Genome IDEU118126
Search identical group
Phylum/ClassViridiplantae
SpeciesIpomoea purpurea
Start position on genome 4453
End posion on genome 1808
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tttttttttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACtg
Downstream region at tRNA end position 
tcatatttga
Secondary structure (Cloverleaf model)
>CHL090800312	Lys	TTT
                   c      ACtg tcatatttga
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2573 (in A-loop)
GTGCGACTAGGATCTTTTACACATTTGGATGAAGTGAGGGATTCGTCTATACCATCGGTAAAGCTTGGAA
GACCGCGACTGATCCTGAGGGGAAATGGATGTTAAAAACAGCATGTCGTATCAACGGAGAGTTCTGAGAA
TATTTCAGTCTTACTAGATCGGTATAAGGCCGTGTTCGAATTCTTAGAACCGAACAAAATGAAAATCCTA
GTTAGGTCGAATGAATAAATGGATAAGGCTGGGGCTTCAATTCAATTCTGGGGAAAGAAAAAGCAACGAG
CTTTGGTTCTTAATTTGAATGATTCCCGAGCTAATTAGACGTTAAAAATCAAAATAGATTAGTGCCCGCG
GCGGGAAGGGGGTTCTCGCCTCACGAGTGGATTCTTTATTTTTTTGTAATGAATCCTACTTATTCTGGAA
TGGAGATTAGTGTGTAAAAGAAAAAGTATGTTGATAAAGAAAGTTTTTCCGAAATCAAAAGAGCGATTCG
GTTTTCAAAATAAAGGATTTCTAACCATCTGATTATCCTATTCTAAAATTCCTATAATATAAATTATAAT
ATAAATAATATTAATATAGATCGATGAAATGGAATGGGGGAGTCTAAGGAGAGTCTAGCGAATCCGTTTA
AAGTTTACCAGGTTCCGAGGTATTTCTTATTCGAACTCTATTTATTATTACTATATATAAATATAAAATA
TAAATACCTTGTTTTGACTGTATCGCACTATGTATCATTTGATAACCCTCAAAATCTTCTGCCTTTGGTC
CAAATCCAAATTAAAATGGAGGAAATTCAAGGATATTTACAGCCAGAGAGATCTCAACAACACAACTTCC
TATATCCACTTCTCTTTCAGGAGTCTATTTATGCACTTGCTCATGATCGTGGTTTAAATAGGTCGATTTC
TTTTAAAAATACCGGGTATGAAAAAAAATTGAGTTTTCAAATTGTGAAACGCTTAATTACTCGAATTTAT
CAACGGATCTATTTTACTACTTATTCTTCTAACAAAAGTCAAATTTTTGGGCCCAACAAGAGTTTGTATT
CTAAACTGCTATCAGAGGGGTTTGCTTTTATTGTGGAAATTCCGTTTTCTTTACGATTCATATTAGAGCG
CAAAAAAATATTAAAATCTCAGAATTTACGATCAATTCATTCAATATTTCCTTTTTTAGAGGACAATTTC
TCACATTTAAATTATGTATTAGATATACTAATACCCTACCCCCCTCATCTGGAAATCTTGGTTCAAACTC
TTCACTATTGGGTGAAAGACGCTTCTTCTTTGCATCTATTACGATTCTTTCTCCACGAGTATTGCAATTT
TAATATTTTCATTACTCCAAAGAGGTCCCGTTCCCCTTTTTCAAAGATAAATCAAAGATTTTTCTTCTTC
TTATATAACTCTTATGTATGTGAATACGAATCCATTTTTTTATTTCTCCGTAACCAATCTCTTCATTTAC
GATCAACCAGTTTTGGAGCCCTTTTTGAACGAAACATTTTCTATGGAAAAATAGAATGCTTTGTAAAAGT
CTTTGCTAAGGATTTTAAGGCAAACCTATGTTTGCTCAAGGATGCGGATCTTTCCATGCATTATTTTAGG
TATCGGGGAAAATCAATTCTGGCTTCAAAAGGAACGCTTCTTTTGATGTCTAAATGGAACTATTATTTTG
TCAATTTTTGGCAATGTTCTTTTTGTTTGTGGTTCCATACTGAAAGAATCTATATAAGTCAACTATCCAG
CCATTCCCTTGACTTTATGGGCTATCTTTCAAGTATTCCACTAACCCCCTCAACGGTACGGAGTCAAATG
CTAGAGAATTCTTTTTTAATAAATAATGCTATTAAGAAATTCGATACTATTGTTCCAATTATTCCTATCA
TTGGATCATTAGCTAAAGCTAAATTTTGTAATGTACTAGGGAATCCCATTAGTAAACCGGTTTGGGCCGA
TTTATCAGATTCTGATATTATTGAACGGTTTGGGCACATATACAGAAATTTTTTTCATTATTATAGTGGA
TCTTCCAAAAAAAGGAGTTTGTATCGAATAAAGTATATACTTCGACTTTCTTGTGCTCGAACTTTAGCTC
GTAAACACAAAAGTACTGTACGCGCTTTTTTACAAAGCTTGGGTTCGGAATTCTTGGAAGAATTCTTTAC
GTCGGAAGAACAAATTCTTTCTTTCACTTTCCCAAACGCTTCTTCTACTTTGCGGGGAGTGTATAAAAGG
CGGATTTGGTATTTTGATATTGTTTGTATCAATGAGCTGGCCAATTATCAATGATTCATTCTCAAATCTT
GAGAGTGGAAATTTTTCCTAAATTAGGAAGAGATGCAAAAAGTTGGATTTCTCCACTATATCTGAAATGT
TGATTCGAAATTTTCATTTTAAGGGTTAACTGAGTATTCAAATTTTTCAAATTTTTAAGAAAAGAAAACT
GATGTCTACATAGGAAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGGTTTTGAATTAA
AGAAAGTAAATTTATTCCATTTTTGACTTTCACAAAAACATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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