The detailed information of tRNA gene sequence


Sequence ID>CHL090800331
Genome IDX15901
Search identical group
Phylum/ClassViridiplantae
SpeciesOryza sativa Japonica Group
Start position on genome 46557
End posion on genome 47183
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
aaaagaaaaT
tRNA gene sequence 
GGGGATATGGCGAAATCGGTAGACGCTACGGACTCAAAATCCGTCGACTTTCTAAGTCGT
GAGGGTTCAAGTCCCTCTATCCCCAacc
Downstream region at tRNA end position 
ctcttttatt
Secondary structure (Cloverleaf model)
>CHL090800331	Leu	CAA
                   T      Aacc ctcttttatt
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    C       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTCTAAGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T*      A
                    C A A
intron: position=34, length=540 (in A-loop)
TGATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGCAACTTCCAAATTCAGAGAAACCCTGGAATT
AAAAAAGGGGCAATCCTGAGCCAAATCCATGTTTTGAGAAAACAAGCGGTTCTCGAACTAGAACCCAAAG
GAAAAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAGTTAATTACGTTGTGTTGCTAG
CGGAACTCCCTTCTAAATTAGGGAAAGAAGGGCTTTCGAAATCTAATACCACGTATAGATACTGGCATAG
CAAACGATTAATCACAGAACTCATATCATAATATAGGTTCTTTAATTCTTTTTTAAAATGAAAATAGGAA
TGATTATGAAATAGAAAATTCATAATTTTTTTAGAATTGTTGTGAATCCATTCCAATCGAATATTGAGTA
ATCAAATCCTTCAATTCATAGTTTTCGAAATCTTTTTAAAAGCGGATTAATCGGACGAGGATAAAGAGAG
AGTCCCATTCTACATGTCAATACTGACAACAATGAAATTTCTAGTAAAAG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK