The detailed information of tRNA gene sequence


Sequence ID>CHL090800332
Genome IDX86563
Search identical group
Phylum/ClassViridiplantae
SpeciesZea mays
Start position on genome 3946
End posion on genome 1386
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttatcc
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTAGTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAtat
Downstream region at tRNA end position 
ggaaaataga
Secondary structure (Cloverleaf model)
>CHL090800332	Lys	TTT
                   c      Atat ggaaaataga
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    G - C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2489 (in A-loop)
GTAAGGCTATGATCTTTTACACATTTGGATGAAGCAACAAATTCGTCCAGACTCTTGGTAGAGTCTAGAA
GACCACGACTGATCCTCAAAGGTAATGAATGGAAAAAATAGCATGTCGTAATAAAATCAATTTCTTTTTT
TTTTTTGAATAAAAAAAATTCTGATTTTCTGGGTCTAGTGAATAAATGGATAGAGCCTGGCTCTAATTCT
GGTAAAATAAAAAAAAAGCAACGAGCTTAACTTCTTAATTGGTTAATTGGAAGGATTCCCCGATCTAATT
AGACGTTAAAAATAGATTAGTGCCTAATGTGGGGAAAGGTTAGGTTTTCCTATGAATGGACCCTTTTACT
TTTTTTTTTTAGGAAATCCTAATTATTCTTGATTATGGGATTGAAAAGAGATGTTATGAATTGAATGTGT
AAAAGAAACAGTATATTGATAAAGAGACTGTATTCCAAAGTCAAAAGAGCGATTGGCCTGCAAAAATAAA
AGATTTGTTCTTGTTTGTTTTATAATTAGAACAAACATAAACTAATTAGATAGAAAAGGAGTGGAAAAAG
TTCTATGGATTAGACTCCCTCTTCTCTCCTGGGTTTGTATTATGCAACACCTTGTTCTGACCATATTGCA
CTATGTATCATCATTTGATAAACCGAGAAATGGCTTTTTTTCTCTATTTCAAGTAGAAATACAAATGGAA
AAATTCGAAGGGTATTCAGAAAAACAGAAATCTCGTCAACACTACTTCGTCTACCCACTTCTCTTTCAGG
AATATATTTATGCATTTGCTCATGATTATGGATTAAATGGTTCCGAACCCGTGGAAATTTTTGGTTGTAA
TAACAAGAAATTTAGTTCACTACTTGTGAACCGTTTAATTATCCGAATGTATCAGCAGAATTTTTTAATT
AATTCGGTTAATTATCCTAACCAAGATCGATTGTTGGATCACCGTAATTATTTTTATTCTGAGTTTTATT
CTCAGATTCTATCTGAGGGGTTTGCGATCGTTGTAGAAATCCCACTCTCGCTAGGGCAACTATCTTGTCC
GGAAGAAAAAGAAATACCAAATTTTCAAAATTTACAATCTATTCATTCAATATTTCCCTTTTTAGAAGAC
AAATTTTTGCATTTACATTATCTATCACATATAAAAATACCCTATCCTATCCATTTAGAAATCCTGGTTC
AACTCCTTGAATACCGGAGTCAAGATGTTCCCTCTTTGCATTTATTGCGATTCTTTCTCTACTATTATTC
GAATTGGAATAGTTTTATTACTTCAATGAAATCCATTTTTCTTTTGAAAAAAGAAAATAAAAGACTATTT
CGATTCCTATATAACTCTTATGTATCAGAATATGAATTTTTCTTGTTGTTTCTTCATAAACAATCTTCTT
GCTTACGATTAACATCTTCTGGAACCTTTCTGGAACGAATCATCTTTTCTGGGAAGATGGAACATTTTGG
TGTAATGTACCCGGGGTTTTTTCGGAAAACCATATGGTTCTTTATGGATCCTCTTATGCATTATGTTCGA
TATCAAGGAAAGGCAATTCTTGCATCAAAAGGCACTCTTCTTTTGAAGAAGAAATGGAAATCTTACCTTG
TCAATTTCTCGCAATATTTTTTCTCTTTTTGGACTCAACCACAAAGGATTCGTCTAAACCAATTAACAAA
CTCTTGCTTCGATTTTCTGGGGTACCTTTCAAGTGTACCAATAAATACTTTGTTAGTAAGGAATCAAATG
CTGGAGAATTCTTTTCTAATAGATACTCGAATGAAAAAATTCGATACCACAGTCCTTGCAACTCCCCTTG
TCGGATCCTTATCAAAAGCTCAATTTTGTACTGGATCGGGGCATCCTATTAGTAAACCCGTTTGGACTGA
TTTATCAGATTGGGATATTCTTGATCGTTTTGGTCGGATATGTAGAAATATTTTTCATTATCATAGTGGA
TCTTCGAAAAAACAGACTTTGTATCGACTAAAATATATACTTCGACTTTCATGTGCTAGAACTTTAGCTC
GTAAACATAAAAGTACGGTACGAACTTTTATGCAACGATTGGGTTCGGTATTTTTAGAAGAATTTTTTAC
GGAAGAAGAGCAAGTTTTTTCTTTGATGTTCACCAAAACAATTCACTTTTCTTTCCATGGATCACACAGT
GAGTGTATTTGGTATTTGGATATTATCCGTATCAATGACCTGGTGAATCCTCTTACTCTTAATTAATCAT
TAGACAAAATTAATAAACTAGAAAGATCGATATCAAGATAAAACTGCCACATTTTCCCATTCTGAAATGT
TCCCATAGTAGGTGAATCCACTGTAAGCTAATTAAGAATCCTCGAAAATTAGTGGACTTCCTCTTCGGAA
TAGAAAATTGGCTATTTCCACATAGGGAAAGTCGTGTGCAATGAAAAATGCAAGCACGATTTGGGGAGGG
GTTTTTTCTATTGTAACAAGGAAGAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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