The detailed information of tRNA gene sequence


Sequence ID>CHL090900029
Genome IDAE009947
Search identical group
Phylum/ClassViridiplantae
SpeciesSaccharum hybrid cultivar SP-80-3280
Start position on genome 47012
End posion on genome 45990
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
cccgcgcgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGAGGGCGAGGTCTCTGGTTCAAGTCCAG
GATGGCCCAgctg
Downstream region at tRNA end position 
cgccagggaa
Secondary structure (Cloverleaf model)
>CHL090900029	Leu	GAG
                   c      gctg cgccagggaa
                     G   A
                     G - C
                     G - C
                     C   C
                     T + G
                     A   G
                     T   T          C T
                    T     A G G A C     G
        G A        A        +           A
      T     C T C G       C T G G T     A
      G     | | | |                 T C
      G     G A G C
        T A        G     TCT
                    C - G
                    G   G
                    C   A
                    C - G
                    C   C
                  C       G
                  T       G
                    G A*G
intron: position=36, length=954 (in A-loop)
TAATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGC
CTGACCCGAAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTTGAATCGGAGTTTG
AAACCAAACAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCCATGTAGATCGAACTT
TCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGGGCCACCGCGGCTCCTCTCTTCTCGAGAATCCAT
ACATCCCTTATCAGTGTATGGAGAGCTATCTCTCGAGCACAGGTTGAGGTTCGTCCTCAATGGGAAAATG
GAGCACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCTTTCATTCTGGGGTGACGGAG
GGATCGTACCATTCGAGCCTTTTTTTCATGCTTTTCCCGGCGGTCTGGAGAAAGCAGTAATCAATAGGAC
TTCCCTAATCCTCCCTTCCTGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCTGCAGGGACCAGGAGATT
GGATCTAGCCATAAGAGGAATGCTTGGTATAAATAAGCCACTTCTTGGTCTTCGACCCCCTAAGTCACTA
CGAGCGCCCCCGATCAGTGCAATGGGATGTGGCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGAGC
AGGTTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACCCCTTCTTTTTTCTG
CCCATCGGAGTTATTTCCCAAGGACTTGCCATGGTAAGGGGGAGAAGGGGGAAGAAGCACACTTGAAGAG
CGCAGTACAACGGGGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAGTCTATTGAT
TCTCTCCCAATTGGTTGGATCGTAGGGGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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