The detailed information of tRNA gene sequence


Sequence ID>CHL090900041
Genome IDAJ271079
Search identical group
Phylum/ClassViridiplantae
SpeciesOenothera elata subsp. hookeri
Start position on genome 11825
End posion on genome 12499
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
cacaaacaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTAGGTAGAGCACCTCGTTTACACCGAGCAGGTCTACGGTTCGAG
TCCGTATAGCCCTctaa
Downstream region at tRNA end position 
agatggaaaa
Secondary structure (Cloverleaf model)
>CHL090900041	Val	TAC
                   a      ctaa agatggaaaa
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        A     AGGTC
                    C   C
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=601 (in A-loop)
GTGCGCCAATGTTTTTCAGGGGAGTCCATCCCAGCATGGAATCAAAAGAATTGATCTTATTGAAAAATCG
ATGTCTTACTCCATCACGTTTAGGGAACAAGAGAACAATAGCCTGACAAAAGGTTCTCGGTTCGATTCGG
GCGCCTATTTAAGAGCGCCAAATGGAACCCATCCTTGATTTGAGATATTGATAAGGTGAATACCCAGCCT
ATTCAATGCTAGGCCTTAATGAGTATAAGGACCTCAAAAAATGCTCTTTTCGCCCTATGAACTTGAAGGT
GTAGGAAGTTTCATATTTGGTTTTTTAAGCAGGTCGATAGGGCCTCCATTTAACTTAGGTTGATCTGATT
TCGGCAAGAAGCAGACCTACGTCAAGATAATCCTTCTTTGAAACACTTTGGTAATGCTCCTGAGTCGAAA
TCCAAATAATGAATCAGAGCACAGGGAGCCATCTCCTTATTGGCAAGAAAAAAGATGGCAGACTAACTGA
TATTTATATCAGTTAATGAAAGAGCCCAATGCAAAAAAAAAAAAAAAAGGCATGTTGGGTCTTTGAAACA
GTTCGAATCATTTTGATAATAATCAGTTTGATCTGTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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