The detailed information of tRNA gene sequence


Sequence ID>CHL090900044
Genome IDAJ271079
Search identical group
Phylum/ClassViridiplantae
SpeciesOenothera elata subsp. hookeri
Start position on genome 109097
End posion on genome 110115
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacaaC
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCgctg
Downstream region at tRNA end position 
cgccaaggaa
Secondary structure (Cloverleaf model)
>CHL090900044	Ile	GAT
                   C      gctg cgccaaggaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=946 (in A-loop)
TTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCTG
ACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACCGGGTTTGAAAC
CAAACCCCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCA
CTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCAGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTA
TCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATGAAATGGAGCA
CCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTTATTCTGGGGTGACGGAGGGATC
GTACCATTCGAGCCTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTCC
TAATCCTCCCTTCCCGAAAGGAAGCACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGATC
TAGCCGTAAGAAGAATGCTTGGCTGATAAATAACTCACTTCTTGGTCTTGCGACCCCCTCAGTCACTACG
AACGCCTCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTTTG
AAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATCG
GAGTTATTTCACAAAGACTTGCCAGGGTAAGGAAGAAGGAGGGAATAAGCACACTTGGAGAGCGCAGTAC
AACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCCC
AATTGGTTGGACCGTAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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