The detailed information of tRNA gene sequence


Sequence ID>CHL090900045
Genome IDAJ271079
Search identical group
Phylum/ClassViridiplantae
SpeciesOenothera elata subsp. hookeri
Start position on genome 110180
End posion on genome 111051
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCactc
Downstream region at tRNA end position 
gtgaacttag
Secondary structure (Cloverleaf model)
>CHL090900045	Ala	TGC
                   g      actc gtgaacttag
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=799 (in A-loop)
TTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCGGGCGGTAATGATAGTATCTTGTACCTGAAC
CGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACA
AAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGGATCGTACATGGACG
GTAGTTGGAGCCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCC
CTTGCGAACAGCTTGATGCACTATCCCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATC
CATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCATCCA
GGGGTCACGGACCGACCATAGAATCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTTAGGTTGAG
CAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGTCGGGCGG
AAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATCCTCCGGAACCGCAAGAATCCTTAG
TTAGAATGGGATTCCAACCCAGCACCCTTTGAGATTTTAAGAAGAGTTGCTCTTTGGAGAGCACAGTACG
ATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTGGAATCAGCCGG
GGGGCCGGAGAGGCGGTGGTTTACCCTGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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