The detailed information of tRNA gene sequence


Sequence ID>CHL090900062
Genome IDAJ428413
Search identical group
Phylum/ClassViridiplantae
SpeciesCalycanthus floridus var. glaucus
Start position on genome 104279
End posion on genome 105149
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCgctc
Downstream region at tRNA end position 
gtgaccttag
Secondary structure (Cloverleaf model)
>CHL090900062	Ala	TGC
                   g      gctc gtgaccttag
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=798 (in A-loop)
TTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAAC
CGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACA
AAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACATG
GACGATAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGATCCCTGGGGAAGAGGATCAAGTTG
GCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAGGAAA
ATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCAT
CCAGGGGTCACAGACCGACCATAGACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTCCGGTTG
GGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGTCGGGC
GGAAAAAGGGGAAGAGCTCCCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTT
AGAATGGGATTCCAACTCAGCACCCTTTGCGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGAT
GAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCAGGG
AGGCCCGAGAGGCGGTGGTTTACCCTGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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