The detailed information of tRNA gene sequence


Sequence ID>CHL090900065
Genome IDAJ506156
Search identical group
Phylum/ClassViridiplantae
SpeciesAmborella trichopoda
Start position on genome 11694
End posion on genome 12544
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position
tcacattgta
tRNA gene sequence
GCGGGTGTAGTTTAGTGGTAAAAGCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTC
CCGCCGCCCGCccct
Downstream region at tRNA end position
ccatatccct
Secondary structure (Cloverleaf model)
>CHL090900065	Gly	TCC
                   a      ccct ccatatccct
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T + G
                     G - C          T T
                    T     C G C C C     A
      T G A        A      | | | | |     G
    G       T T T G       G C G G G     C
    G       | | + |                 T T
    T       A A G C
      A A          C     CGAT
                    C   A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=25, length=779
TGTGATTCGTTCTGTTACCAAACAAAAAAGTTAAGGGTCCCTCGGTTTGATTCCGATTCCGATCAAAAAC
TTTATTTCTTAAAAGGATTGAATCCTTTCCTGTAAATGCCACTATTGAGGAAAAAATATACATTCTCGTG
ATTTGTATCCAAAGGGAAATAGAAATAAAAAAAAAAAAAAGAAAAAAATTGTTTGGATTATGGAATTGCG
AAGCATAATTGTTTTTAGTTTTAGCTGGATTCGTCCTTCCAATTGGATGAGTATGAGTAAGGGATCCATG
GATGAAGATACAAAAATCTATTTCTAATCGTAACTAAATCTTCAATTTTTGTAAAAGAGAGATTGAAGCC
AAATAGCTATTCAATGATGACTTTAGTTTACTAGGGGCATCGGCATGGAGTTTCGGCTCGGTGGAAATAA
AATCTTTTCCTCAGGATTCTTACGAATAGAAATAGGGAACGAAGTAACTAGAAGTATTTGTTCAAATCCC
TCTCTCTTCTAGAGGGATCATCTAGAAAGCGAGTATCTTTGGACACATTCATACAGAAAAGCTGACATAG
ATGTTATGGATTGAATAAAAAAAAAAAAAAAGAATTCGGATTTGCTATAACTCCCTTCTTTTCCGTCCAT
TAAAAGATGTTTTTTTATTTTTATCTAGTTTCCTTGCTTTACGCAGTGAGAATCTATCCATCTTCATAAA
GGAGCCGAATGAAACCAAAGTTTCATGTTCGGTTTTGAATTAGAGACGTTAAAAATAATGAATTAACGTC
GACTATAAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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