The detailed information of tRNA gene sequence


Sequence ID>CHL090900077
Genome IDAJ879453
Search identical group
Phylum/ClassViridiplantae
SpeciesAcorus calamus
Start position on genome 9171
End posion on genome 10002
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
tcacattgag
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAAGCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTC
CCGCTACCCGCctct
Downstream region at tRNA end position 
attccattta
Secondary structure (Cloverleaf model)
>CHL090900077	Gly	TCC
                   g      ctct attccattta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
      T G A        A      | | | | |     G
    G       T T T G       G C G G G     C
    G       | | + |                 T T
    T       A A G C
      A A          C     CGAT
                    C   A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=25, length=760
TGTGATTCGTTCCATTCTTAACTTAAATAGTTAAGGGATCTTTCGGTTTCATTCATATTCCGATCAAAAA
CTTTATTTCTTAAAAGGGTTTAATCCCCTTTACCTCTCAATGACACATTTGAGGAAGAATATAAATTCTC
GTGATTTGTATCCTAGGATCAATTCAATTAGAAATTGAATCCAAAATGTTGGATTATGGAATTGCGAAGC
ATAATTTTTGTTGAGTTAAATCAACTCTTCCAATTAAATGAGTATGAGTAAAGGATCCATGGATAAAGAT
TCAAAAGTGGATTTCTAATCGTAACTAGATCTTCAATTTTTTTGTTGTAAGGGGGAGATTGAAGCAAAAT
AGCTAGAAAACGACGGCTTTAGTTTACTAGCGCCATCAACATATTCTTCCAGCTCGGTGGAAACCAAATT
CTTTTCCTCAGGATTCGGTGAGTAGAAATAGGGAACGAAGTAACTAGATAGATTTGGGAGAATCCCAATC
GTCTAGAGGGATCATCTAGAAAGCGAGTAGCTTTAGATGCATTTAGAGAGAAAAGCTGACATAGATGTTA
TGGATTTCGTGTTTTTTTTAATGGACTATGACCTCCCTCATACACCGTAACTTTGTTCTGTTTTTTGTAT
TTTTATTTATGCCATTTATGCCTTAGAAGTTATCGACTTTCCTTCCATAAAGGAGCCGAATGAAACCAAA
ATTTCATGTTCGGTTTTGAATTAGAGACGTTAAAAAAGATCAATCGACGTCGACTATAAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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