The detailed information of tRNA gene sequence


Sequence ID>CHL090900104
Genome IDAM711640
Search identical group
Phylum/ClassViridiplantae
SpeciesCuscuta reflexa
Start position on genome 111102
End posion on genome 110087
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ctcgcactaa
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL090900104	Ile	GAT
                   a      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=944 (in A-loop)
TTGCGTCGTTGTGCCCGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCGGCGCCTG
ACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAACCGGGGTTTGAAA
CCAAACTCCTCCTCAGGAGGATAGATGGGGCGATTCGGGTGAGATCCAATGTAGATCCAACTTTCGATCA
CTCGTGGGATCCGGGCGGTCCGGGAGGGACCACCACGGCTCCTCTCTTCTCGAGAATCCATACATCCCTT
ATCAGTCTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAATGGAGC
ACCTCACAACGCATCTTCACAGACCAAGAACTACGAGATCAACCCTTTCATTCTGGGGTGACGGAAGGAT
CGTACCATTCGAGCCATTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAAACAATAGGATTTC
CCTAATCCTCCCTTCCCGAAAGGGAGGGCGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTTGA
TCTAGCCGTAAGAAGAATGCTTGGTATATTGGTATATATAACTAACTTCTTGGTCTTTGACCCCCTCAGT
CACTACATCAGTGCAATGGGATGTGTCTATTTCTCTATCTCTTGACTCGAAATGGGAGCAGGTTTGAAAA
AGGATCTTAGAGTGTATAGGGTTGGGCCAGGAGGGTCTGGTCTCTTAACGCCTTATTTTTTTCATTGGAG
TTCTTTCACAAAAACTTGCCAGGGTAAAGGAAGAAGGGGTGAACAAGCACACTTGGAGAGCGCAGTACAG
CGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAACGAATCGACTGATTCTCTCCCAA
TTGGTTGGACCGGAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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