The detailed information of tRNA gene sequence


Sequence ID>CHL090900114
Genome IDAP002983
Search identical group
Phylum/ClassViridiplantae
SpeciesLotus japonicus
Start position on genome 52229
End posion on genome 51449
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ttggattgga
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAACCCTTAGCCTTCCAAGCTAACGATGCGGGTTCGATTC
CCGCTACCCGCTtct
Downstream region at tRNA end position 
attctatttc
Secondary structure (Cloverleaf model)
>CHL090900114	Gly	TCC
                   a      Ttct attctatttc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
      T G A        A      | | | | |     G
    G       T T T G       G C G G G     C
    G       | |   |                 T T
    T       A A C C
      A A          C     CGAT
                    T - A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=24, length=709
GTGCGATTCGTTCTATGGACTCCCTAATAGTTAAGGGATACCCTGTTTAATTCATATCCAGATCACACAA
AAACTTTATTTCCTACTTAAAGGAGTTTAATCCTTTATACCTTTGAACGAACGATTCGAGGAATAATATA
CATTATCATAATTTGTATACAATAAGAATCCATTTATTGACAAATTTCATTCGAAAATTATGAAACATAA
ATTTTTTTTTATTGGATCAAGAATTCCAATTTTTTAAGTATAAGTAAAGGATCCATGGAATAAAGATATA
GAAAGTTTATTTCTAATCGTAACTAAATCTTACATTTTTTTATTTATTTTGTATAGGATAGATTGAAGCA
GAATAGCTATTAAACGATTATTTTAGTTTACTAGAAACATCGATATATTTTTTTAGCTCGACAGAAATTT
TATTCTTTTCCTAAAGATTCTATCAAATAGAAATAGAGAACGAAGTAACTAGAAAATAGGAAAAAAAAGA
GATTGTTTTAATACTCCTCTTCTATAGGGATCATCTAAAAAGCAAGGTTTTTGAAATGTATTCGTACAGA
AAGGCTGACATAGATGTTATGGGTCATTTTATTGTTCATGTATTTTTTTCTCTTTTAATTAATTCCGTAA
AGGAGCTGAATGAAACAAAAGTTTCACGTTCGGTTTTGAATTAGAGACGTTCAAGATAATGAACGAACGT
CTACTATAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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