The detailed information of tRNA gene sequence


Sequence ID>CHL090900131
Genome IDAP005672
Search identical group
Phylum/ClassViridiplantae
SpeciesPhyscomitrella patens subsp. patens
Start position on genome 88963
End posion on genome 89812
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
catgcatgta
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCGCCGCCCTTGCAAGGCGGATGTCAGCGGTTCGAGT
CCGCTTGTCTCCgcca
Downstream region at tRNA end position 
gctaatataa
Secondary structure (Cloverleaf model)
>CHL090900131	Ala	TGC
                   a      gcca gctaatataa
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T + G
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=777 (in A-loop)
TTGGGTCGTTGCGCTTACGGGTTGGATGCCTAATTGTCTAGGCGGTAATGATAGTATCTTTTACCTAAAC
CGGTGGCTAACTTTTTTCCAGGAATGGAAAAGAGGACCGGAACATGCCACTGAAAAACTTTACTGAGACA
AAGATGGGCTGTCGAAAGTGTAGAGAAGGTAGGATGGGTAGTTGGTTAGATCTAGTATAGATCGTACATG
GGCGATAGTTAGAGTCGGCGGCTCTCCTAGGGTTACCTCATCTAAAATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCGAACAGCTTGATACACTATTTCTCTTCAACCCTTTAAGTACAATATAATAAAAGGAACAAA
AAGCCATGGACCGACCCCCATCATCTCCATCCCGTAGGAACTACGAGATCGTCTCAAGGGTGCCAAAGGT
ACTCAAAGGGCCACAGACCGACCATATAATCTGATTCAAGAAGTGGAACACATTAGTTGGTTGTCCACTT
TATTTGGCAGTAAGGGTCGAAGAAGGGCGACAATTATCATTGTTAAGACTAAAAAGTCAGGCGAAAAAGA
AAAAGTTTTTTAATTTTTTTTTTAGTTGAACAATTTCAAGTTACAAAAATTTTGAAAATTGAATTCCAAC
TCAAGAATGCCTTCTGATAAAAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCG
GGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCGATCAGAGAGGCCTGAAAGACGGTAGCTT
ACCCTGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK