The detailed information of tRNA gene sequence


Sequence ID>CHL090900132
Genome IDAP005672
Search identical group
Phylum/ClassViridiplantae
SpeciesPhyscomitrella patens subsp. patens
Start position on genome 119139
End posion on genome 118290
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
catgcatgta
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCGCCGCCCTTGCAAGGCGGATGTCAGCGGTTCGAGT
CCGCTTGTCTCCAgcc
Downstream region at tRNA end position 
agctaatata
Secondary structure (Cloverleaf model)
>CHL090900132	Ala	TGC
                   a      Agcc agctaatata
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T + G
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=777 (in A-loop)
TTGGGTCGTTGCGCTTACGGGTTGGATGCCTAATTGTCTAGGCGGTAATGATAGTATCTTTTACCTAAAC
CGGTGGCTAACTTTTTTCCAGGAATGGAAAAGAGGACCGGAACATGCCACTGAAAAACTTTACTGAGACA
AAGATGGGCTGTCGAAAGTGTAGAGAAGGTAGGATGGGTAGTTGGTTAGATCTAGTATAGATCGTACATG
GGCGATAGTTAGAGTCGGCGGCTCTCCTAGGGTTACCTCATCTAAAATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCGAACAGCTTGATACACTATTTCTCTTCAACCCTTTAAGTACAATATAATAAAAGGAACAAA
AAGCCATGGACCGACCCCCATCATCTCCATCCCGTAGGAACTACGAGATCGTCTCAAGGGTGCCAAAGGT
ACTCAAAGGGCCACAGACCGACCATATAATCTGATTCAAGAAGTGGAACACATTAGTTGGTTGTCCACTT
TATTTGGCAGTAAGGGTCGAAGAAGGGCGACAATTATCATTGTTAAGACTAAAAAGTCAGGCGAAAAAGA
AAAAGTTTTTTAATTTTTTTTTTAGTTGAACAATTTCAAGTTACAAAAATTTTGAAAATTGAATTCCAAC
TCAAGAATGCCTTCTGATAAAAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCG
GGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCGATCAGAGAGGCCTGAAAGACGGTAGCTT
ACCCTGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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