The detailed information of tRNA gene sequence


Sequence ID>CHL090900146
Genome IDAP007232
Search identical group
Phylum/ClassViridiplantae
SpeciesLactuca sativa
Start position on genome 30989
End posion on genome 30210
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ttgcactgta
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAACCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCC
GCTACCCGCTcta
Downstream region at tRNA end position 
tagcctctac
Secondary structure (Cloverleaf model)
>CHL090900146	Trp	CCA
                   a      Tcta tagcctctac
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
        G A        A      | | | | |     G
      T     T T T G       G C G G G     C
      G     | | | |                 T T
      G     A A A C
        T A        C     GAT
                    T   C
                    A   A
                    G   A
                    C   T
                    C   C
                  T       G
                  T       A
                    C C A
intron: position=25, length=710
GTGTGATTCGTTCTATTAACCCCCTTAATAGTTAAAGGGTCTTTCGGTTTGATTCATATTCCGATCAAAA
ACTTTATTTCATTAAAAGGATTCAATCCTTTACCTTTCAATGACACATTCAAGGAAAAATATAAATTTTC
GGGATTTTTATCCAAAGGTCAATTAAAAAATGAAAACTTGGATTATAAAATTGCGAAACAAAATTTTAAA
ATTGGATCAATACTTCCAATTGAATGAGTATGAATAAAGAATCCATGGATGAAGATAGAAAAGTAGATTT
CTAATTTCTAATCGTAACTAAATCTTCAATTTTTGTTTGCATTTGTAGCGAATAAATTGAAGCAAAATAG
CTATTAAAGAATATCTTTAGTTTACTAGAGACATCGACATATTATTTTAGCTCGGTGGAAATAAAATCCT
TTTCCTTAGGACCCTCTCAAATAGAAATAAAGAACGAAGTAACTAGAAAGATTGTTAGAATTGCCTTCTT
CTAGAGGGATCATCTATAAAGCGAGTCGTTTTGAATTGAATATATTCAAACAAAAAGCTGACATAGATGT
TATGGGTATCATTTTTTTTTTGTAAGTTGGTTCACATCTGAAATCTAGCAATTTATCCATTTTCCATAAA
GGAGCCGAATGAAACCAAAGTTTCATGTTCGGTTTTGAATTAGAGACGTTAAAAATGATGAATCGACGTC
GACTATAACC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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