The detailed information of tRNA gene sequence


Sequence ID>CHL090900149
Genome IDAP007232
Search identical group
Phylum/ClassViridiplantae
SpeciesLactuca sativa
Start position on genome 101979
End posion on genome 102998
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ctcgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAGT
CCAGGATGGCCCgctg
Downstream region at tRNA end position 
cgccagggaa
Secondary structure (Cloverleaf model)
>CHL090900149	Ile	GAT
                   c      gctg cgccagggaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
      T G A        A      + | | | |     A
    G       C T C G       T C T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=947 (in A-loop)
TTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCGGCGCCTG
ACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAACCGGGGTTTGAAA
CCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCGATTC
ACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCATGGCTCCTCTCTTCTCGAGAATCCATACATCCCT
TATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAATGGAG
CACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCTTTCATTCTGGGGTGACGGAGGGA
TCATACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCCGAGGTCTGGAGAAAGCTGAAATCAATAGGATT
TCCCTAATCCTCCCTTACCGAAAGGAAGAGCGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTG
GATCTAGCCGTAAGAAGAATGCTTGGTATAAATAACTCACTTCTTGGTCTTCGACCCCCGCAGTCACTAC
GAACGCCCCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTTT
GAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACGCCTTCTTTTTTCTTCTCATC
GGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAGGCACACTTGGAGAGCGCAGTA
CAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCC
CAATTGGTTGGACCGTAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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