The detailed information of tRNA gene sequence


Sequence ID>CHL090900168
Genome IDAP009339
Search identical group
Phylum/ClassViridiplantae
SpeciesCycas taitungensis
Start position on genome 4136
End posion on genome 1579
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
atcctaatat
tRNA gene sequence 
GGGTTGCTAACTCAATGGCAGAGTACTCGGCTTTTAACCGACGAGTTCCGGGTTCGAGTC
CCGGGCAACCCAgat
Downstream region at tRNA end position 
cgattggatc
Secondary structure (Cloverleaf model)
>CHL090900168	Lys	TTT
                   t      Agat cgattggatc
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        C A        A     GAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2486 (in A-loop)
GTGCGACTAATATCTTTTACACATTTATATGGAGTAACAAATTCGTCCATACTTTCGGTAAAGTTGTGAG
ACTATGACTGATCCTGGAAGGGAAATGAATGGAAAAAACAGCATGTCGTTCAAATAAATGATCTTGATGA
GACTTGATCTGATCGTATCCGATCAGAACCAAATCTCATCCAAGGAATCAAATGGATGGGAAACGTATAT
CATATGCATAGATGGATGTGTGATATGCTCATCCATTTCAATGTGATAATTGTGAAATAGGATTGAATAA
ATTCGCGGTTAAGTCAGGTGAGTCAATGGATAGAGCTAAATGGCCTAAATCATAGGGAAAACCAGAGGAA
CGAGCTTCTGTTCTTCATTTAGATGAGGAATCCCCTTTACTGATCAGGAGTTAAGAGCATATCAGTGTCC
ATCTATATGGGGGAGGTTTTTCTTATGAATAGATTAGGGATTTATCCGCCCAGAATGAGTCCTAAGTACT
CGAGTACGAATGTGTAGGAGAAATGGTATACTGACCGTGTCAATTCATTCCAAAGTCAGGAGAGCGATCA
GGTCGCTAAGAGAAAGGATTTTCATTATCTCTCATGTGAGATTTTTAGATAGAAGATCCATTGAATAGGA
TCTCTATCTCTCAGATGGATCATTATCTATCTTGTCTTGACCGGATGGATCGCACCATGTATTATTTTGT
AACCCAAGAGGTCACTCTCATGAGGGCCATAGCCGAGGTTTTATTGAAATGGATAAGTTTCGAAGAAATG
GAAAGGAAGATACATTCCGGCAGCGGCGTTTTCTATATCCACTCCTTTTTCAAGAAAATCTTTACGCAAT
TGCTTATGATCATTATTTAAGTAGATCAAGTTCCTTCGAATCGATGGAAAATTCAAGTTACAATGATCGA
TTCAGTTTCCTAACTGTAAAACGTTTAATTAGTCGGATACGTCAACAGAATGGTTCAATTGTTTCATTTG
GAAATTACAACCAAAATAAAAATAAATTAGTTGGTCACAATAGGAATTTCTATTCCGAATTGGTACTAGA
AGGTTTGACAGTGGTTCTAGAAGTTACCTTCTCAATCCAATCGAAACATTATCTAGAAGGAATGAATGAA
TGGAATAGTTTCCGGTCCATCCATTCCATATTCCCTTTTATGGAAGACAAATTTCCACATTCCAATTTTC
TCTTAGATATACGAATACCCCACTCTACTCATCCGGAAATTTTGGTTCGAACTTTTCGTTACTGGATCCA
AGATGCTCCTTCTTTACACTCATTACGATCTGTTCTCCACGAACATCGAAATCTTATTCTTTCGGAGAAT
TTGGATCAATTGATTCTCATCGCTTCGAAAGAAAAGACAAGGTTATCCCTGTCTGTCCTGTGGAATTATT
ATGTCTATGAATGTGAATCTCTTTTAGTTCCCCTTTGGAAACGATTTTCTTATTCACGATCATTGTCCTA
TGGAGCTTTTCTAGAGCGAACTACTTTTTATAGAAAGATCGAGCATATTGTCATATTTTCTCATAAATCT
ATTAAAGATTTGAAAAAAAGGATCTGGTTTTTGAAGGATCCTTCCATTCATTATGTGAAAGATAGAGAAA
GATTTCTTATAGCTCTGAGGGGTACTTACCTTCTAGTGAAAAAATGGAGATATCATCTTACAAATTTTTG
GCAGTGTCATTTTCATCTCCGGTCCCAACCATATCGGATGTCTATCGATGAATTATCCAAGAATTGTTTT
TCTTTCCTGGGCTATTTATTTAGCGTCCAAATGAAGACTTTCGTGGTTAAGATAAAAATGCTGGATGATT
CATTCATTACCGATCCCATTACCAAGGAATTCGATCCAATAGCTCCAACTACACTTTTGATTGGATATTT
AGCTAAAGAAAGGTTTTGTGATATCTCAGGGCGCCCAACTGGTAGATTGGCCTGGACTGGTCTAACAGAT
GACAATATCCTCCATCGATTTGATCGAATTTGGAGAAACATCTTACATTATTACAGTGGATCCTCAAAGA
AAGATGGTTTATATCGTATGAAGTATATACTTCGACTTCCATGTGCTAAAACTTTAGCCTGTAAACATAA
AAGTGCGATACGCGTAGTTCGGGAAAGATTCGGTTCAGAACTATTCACGAAATCATCTCCAAAAGAACGA
GAATTGATCTCTTTGTCTTTCTCAAAGACCCGTTCACAGAGAGAACGAATTTGGCATTCAGATATTCTCC
AAAGAAATCCTTTTGTTAATTCCTGGTGGAATAAACAAAATCTACAAGTAGAAACCCCATTCGACCGATG
AAATGTTCATTGAGCAATTGCCAGAATAGAATCGATCCACAATCTATTTTTTTTTTTTTTCCGGGAATTA
GGATGATTACGAAATAGATACATAGAGAAAGCCGTGTGCAATGAAAATTGCAAGCACGGTTTGGGGAGAG
ATTTTTTCCTCCTATTGAAGGAGGAGATCATCCACT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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