The detailed information of tRNA gene sequence


Sequence ID>CHL090900199
Genome IDAP009369
Search identical group
Phylum/ClassViridiplantae
SpeciesArabis hirsuta
Start position on genome 135124
End posion on genome 134107
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAATC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaagga
Secondary structure (Cloverleaf model)
>CHL090900199	Ile	GAT
                   c      Agct gcgccaagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T A
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=946 (in A-loop)
TTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCTG
ACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAACCGGGGTTTGAAA
CCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTC
ACTCGTGGGATCCGGGCGGTCCGGAGGGGACCACCACGGCTCCTCTCTTCTCGAGAATCCATACATCCCT
TATCAGTGTATGGCCAGCTATCTCTCGAGCGCAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAATGGAG
CACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCACCCCTTTCATTCTGGGGTGACGGAGGGA
TCGTACCATTCGAGCCTTTTTTCATGCTTTTCCCGGGGGTCTGGAGAAAGCTGCAATCAATAGGATTTTC
CTAATCCTCCCTTCTCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGAT
CTAGCCGTAAGAAGAATGCTTGGCTGATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTACG
AACGCCCCCGATCAGTGCAATGGGACGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTTTG
AAAAAGGATCTTAGAGTGTCTAGGGTTAGGCCAGTAGGGTCTCTTAACGCCCTCTTTTTTCTTCTCATCG
AAGTTATTTCACAAATACTTCCTATGGTAAGGAAGAGGGGGGGGACAAGCACACTTGGAGAGCGCAGTAC
AACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCCC
AATTGGTTGGACCATAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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