The detailed information of tRNA gene sequence


Sequence ID>CHL090900262
Genome IDAY780259
Search identical group
Phylum/ClassViridiplantae
SpeciesEucalyptus globulus subsp. Globulus
Start position on genome 107466
End posion on genome 108489
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCgctg
Downstream region at tRNA end position 
cgccaaggaa
Secondary structure (Cloverleaf model)
>CHL090900262	Ile	GAT
                   c      gctg cgccaaggaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=952 (in A-loop)
TTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCTG
ACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACCGGGTTTGAAAC
CAAACCTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCA
CTCGTGGGATCCGGGCGGTCCGGGGGGGACCCCCACGGCTCCTCTCTTCTCGAGAATCCATACATCCCTT
ATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAATGGAGC
ACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGAT
CGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTT
TCCTAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGG
ATCTAGCCGTAAGAAGAATGCTTGGATGATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTA
CGAACGCCCCCGATCAGTGCAATGGGACGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTT
TGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTGTCTCTTAACGCCTTCTTTTTTCTTC
TCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCG
CAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTC
TCTCCCAATTGGTTGGACCGGAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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