The detailed information of tRNA gene sequence


Sequence ID>CHL090900263
Genome IDAY780259
Search identical group
Phylum/ClassViridiplantae
SpeciesEucalyptus globulus subsp. Globulus
Start position on genome 108559
End posion on genome 109434
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCactc
Downstream region at tRNA end position 
gtgaacttag
Secondary structure (Cloverleaf model)
>CHL090900263	Ala	TGC
                   g      actc gtgaacttag
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=803 (in A-loop)
TTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCAGTAATGATAGTATCTTGTACCTGAAC
CGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACA
AAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGACAGTTGGTCAGATCTAGTATGGATCGTACATG
GACGGTAGTTGGAGCCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAAGAA
AATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCA
TCCAGGGGTCGCGGACCGACCATAGAATCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTTAGGT
TGAGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGTCGG
GCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATCCTCCGGAACCACAAGAATCC
TTAGTTAGAATGGGATTCCAACTCAGCACCCTTTGCGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAG
TACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAG
CCGGGGGGCCGGAGAGGCGGTGGTTTACCCTGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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