The detailed information of tRNA gene sequence


Sequence ID>CHL090900265
Genome IDAY780259
Search identical group
Phylum/ClassViridiplantae
SpeciesEucalyptus globulus subsp. Globulus
Start position on genome 141834
End posion on genome 140811
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgaC
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCagct
Downstream region at tRNA end position 
gcgccaagga
Secondary structure (Cloverleaf model)
>CHL090900265	Ile	GAT
                   C      agct gcgccaagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=952 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACCGGGTTTGAAA
CCAAACCTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTC
ACTCGTGGGATCCGGGCGGTCCGGGGGGGACCCCCACGGCTCCTCTCTTCTCGAGAATCCATACATCCCT
TATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAATGGAG
CACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGA
TCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATT
TTCCTAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTG
GATCTAGCCGTAAGAAGAATGCTTGGATGATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACT
ACGAACGCCCCCGATCAGTGCAATGGGACGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGT
TTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTGTCTCTTAACGCCTTCTTTTTTCTT
CTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGC
GCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATT
CTCTCCCAATTGGTTGGACCGGAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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