The detailed information of tRNA gene sequence


Sequence ID>CHL090900271
Genome IDD17510
Search identical group
Phylum/ClassViridiplantae
SpeciesPinus thunbergii
Start position on genome 8845
End posion on genome 9656
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
tcagatcgtg
tRNA gene sequence 
GCGGGTATAGTTTAGTGGTAAAACCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCC
CGCTACCCGCaaca
Downstream region at tRNA end position 
gatatctacc
Secondary structure (Cloverleaf model)
>CHL090900271	Gly	TCC
                   g      aaca gatatctacc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T T
                    T     C G C C C     A
        G A        A      | | | | |     G
      T     T T T G       G C G G G     C
      G     | | | |                 T T
      G     A A A C
        T A        C     CGAT
                    C   A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
intron: position=25, length=741
GTGTGATTCGTTACATTATCAACTCGAATAGTTGAAGGATCTTTTACATGGATCTTTGATCCATCTAAAG
CTCTATTTACAGATAGGTTCAAAACCTTCCCTATGAATACCCAGGAATAGCATACCTTCTCGTAATCTGG
GTCTGAAATGATGAAAGATAAACACATTTTTGGTTCCAAGATAGCGACACAGAATGTTTGAAAGGTTAGA
TAAATTACAGATCTATGGGGAAGATATTTTTTCATCGTGACTAAACCTTCAACTTATGGATGGAAGGACC
CCAGGTTGAAGCCGAATAGCTATAGAACTATGACTTTGGTTTACTTGGGTTATCGGCATTTCGTTCGAGC
TCGGTGGAATTTGTTCTCCTAGGGATCAGAATCAGTAGAAATAGGGAACGAAGTAACTAGAAAGATTTGT
GATTATTTTAAACTTTTCAAATTTATCTTTCTATCAGGATCATCTAGAAAGTGAGTAAGTATTCTACGAT
TTTGGGCCCTTCACTAAAAAAAAAGAGAATAAACTGACGTAGATGCCATGGGTACGATAATAAGGTTTTT
TTTTAGAAAAAAAAAAGAGGAGAAAGAAAGGAATTGAAAATTCCTTTCAAAAAGATTTGATATAAATACT
CCGCTTCTTCCCTCATACCGCTCTCTATCTCCCATGAAGGAGCCGAATGACATTAAATTCTCATGTTCGG
TTCTGAATTAGAGACATCGAATAATAAATGTCGACTATAAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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