The detailed information of tRNA gene sequence


Sequence ID>CHL090900286
Genome IDDQ229107
Search identical group
Phylum/ClassViridiplantae
SpeciesChara vulgaris
Start position on genome 139224
End posion on genome 140211
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ccaaaatgat
tRNA gene sequence 
GGGCTATTAGCTCAGTTGGTAGAGCGCGCCCCTGATAAGGGCGAGGACTCTGGTTCAAAT
CCAGGATAGCCCttta
Downstream region at tRNA end position 
ttctgcacct
Secondary structure (Cloverleaf model)
>CHL090900286	Ile	GAT
                   t      ttta ttctgcacct
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          T A
                    T     G G A C C     A
      T G A        A      + | | | |     A
    T       C T C G       T C T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGAC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=915 (in A-loop)
TTGCGTCGTTGTGATTAGACTGTAGAGGCCTTCAGCCACATAGGTAGTTCGATGTGTTAATCCGCGCCTA
ACAAGACGGAATCTTCCGATATAACGAACCTTAGCATGGCGTACTCTGTTTTTCAATCTTAAAATAAAGT
CAATACTCAGAGGTATAAGACAAGAGGCGGTACAGGTGAAATCTTTTCTAGCATAGACAAAACTTCACTC
AATTCCCTGTGGGACAAGGGGCAGTCCAGAGAAGTAAGTTCATTGAATTTGACTTCTCTCTTGTTGAGAA
TTCAAAGATTCCTTATCAATCCTTGAGTAACTATCTCTCACACACAAGCGGATATTCTGCTGCAGGGAAA
TCAATACAACATTATTTTTATTTTACCGACGCACGCATCTCTACAGACTAAGAACTACGAGATCACCTAG
TCTAGTCAGAATTTCTTATTATTCATAATTTATTATTATGTTGTTTTGAGTCTACGGTGACGGAGGGATC
ATAGTACATTGAAACGGAATTTCTTTAAAAAGCTATTTTCTCATTTTTGCCCGAATCCGAATGTGAGATG
AAATGATATTATGTCTCTCTTATTGAGTAGGGTTGATTCTTCTTTCTCTTACTACAAAAAAGTAAGTAAC
ATCAGTTTCTGGTACAATGGAACGTTTTTCTCATTTCAAGGTGAGAGTTTTCAAGATATAAAGGATCTCA
GAATGTATAAAAGTATGGCGGAAATGCAATAAAATTGAAATGAATATTTGTCTATTGCATTCGTTAGATC
AAATACAATCAGAGAGCGCAGTATGATGAAAATCGTATGCTGTGTTCGGGAAGAATGAACCGTGTGTCAA
GCTTTTTAATTAGGTTATTGATTGATTTTGTGATTACTTAATCAATCAATAAGTTGCCACGGTGACTTAC
TTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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