The detailed information of tRNA gene sequence


Sequence ID>CHL090900329
Genome IDDQ673255
Search identical group
Phylum/ClassViridiplantae
SpeciesJasminum nudiflorum
Start position on genome 148456
End posion on genome 147442
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ctcgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL090900329	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=943 (in A-loop)
TTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCGGCGCCTG
ACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAACCGGGGTTTGAAA
CCAAACCTCTCCTCAGGAGGATAGATGGGGCGATTCGGGTGAGATCCAATGTAGATCCAACTTTCGATTC
ACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCATGGCTCCTCTCTTCTCGAGAGTCCATACATCCCT
TATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCACTGGGAAAAGAAAATGGAG
CACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCTTATCATTCTGGGGTGACGGAGGG
ATCGTACCATTCGAGCCGTTTTTTTTCATGCCTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGAT
TTCCCGAATCCTCCCTTCCCGAAAGGAAGAGCGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATT
GGATCTAGCCGTAAGAAGAATGCTTGGTATAAATAACCCACTTCTTGGTCTTCGACCCCCTCCGTCACTA
CGAACGCCCCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTT
TGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACGCCTTCTTTTTTCTTCTCGT
CGGAGTTATTTCACAAAGACTCGCAGGGTAAGAAGGTGGGAACAAGCACACTTGGAGAGCGCAGTACAAC
GGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCCCAAT
TGGTTGGACCGTAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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