The detailed information of tRNA gene sequence


Sequence ID>CHL090900334
Genome IDDQ886273
Search identical group
Phylum/ClassViridiplantae
SpeciesPhaseolus vulgaris cultivar Negro Jamapa
Start position on genome 100032
End posion on genome 100915
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ctcggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCactc
Downstream region at tRNA end position 
gtgaacttag
Secondary structure (Cloverleaf model)
>CHL090900334	Ala	TGC
                   g      actc gtgaacttag
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=811 (in A-loop)
TTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAAC
CGGTGGCTCACTTTTTCTAAGTAATGGGAAAGAGGACCGAAACATGCCATTGAAAGACTCTACTGAGACA
AAGACGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACATG
GACGGTAGTTGGAGTCGGTGGCTCTCCTAGGGTTTCCTCATTTGGGATCATCCTGGGGAAGAGGATCAAG
CTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAAA
AGAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGG
CATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAAAAAGCGGAACGCATTAGCTATCCGCTCTCAG
GTTGGACAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAAACCAGTATTCTTAAGAGCAAAGAGT
CGGGCGGAAAAAAAGAGGGCGGGGGAAGCTCTCCGTTCCCGGTTCTCCTGTAGCTGGATCCTCCGGAACC
ACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAGCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTG
GAGAGCACAGTACGATGAAAGTTGTGAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATG
GTAGAATCAGTCGGGGCCTGAGACGCAGTGGTTTACCCTGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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