The detailed information of tRNA gene sequence


Sequence ID>CHL090900336
Genome IDDQ886273
Search identical group
Phylum/ClassViridiplantae
SpeciesPhaseolus vulgaris cultivar Negro Jamapa
Start position on genome 131157
End posion on genome 130142
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAATTGCGGGGCGAGGTCTCTGGTTC
AAGTCCAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgtcgagga
Secondary structure (Cloverleaf model)
>CHL090900336	Ile	GAT
                   c      Agct gcgtcgagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     GGGCGAGGTC
                    C - G
                    G - C
                    C - G
                    C   T
                    C   T
                  C       A *
                  T       A
                    G A T
intron: position=39, length=939 (in A-loop)
TCGTTGTGCCTGGACTGTGAGGGCTCTCAGCCACATGGATAGTTTAATGTGCTCATCGGCGCCTAACCCT
GAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTTGAACCGGAGTTTGAAACCAAA
CTTATCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTCTTCACTCG
TGGGATCCGGGCGATCCGGGGGGACCACTACGGCTCCTCTCTTCTCGAGAATTCATACATCCCTTATCAG
TATATGGACAGTTATCTCTCGAGCACAGGTTTAGGTTTGGCCTCAATGGAAAAAAACGGAGCACCTAACA
ACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGCGGGATCGTACCAT
TCGAGCCTTTTTTTCATGCTTTTCCCGGGGGTCTGGAGAAAATTGCAATCAATAGGATTTTCCTAATCCT
TCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCACAGGGACCAGGAGATTGGATCTAGCCATAAGA
AGAAGAAAATACTTGGCTGTTCAATAACTCACTTCTTGGTCTTTGACCCCCTCAGTCACTACGAACGCCC
CCGATCAGTGCAATGAGATGTGTCTATTTATCTATCTCCGAAAAGGGGGGGGGGAGCAGGTTTGAAAAAG
GATCTTAGAGTGTCTAAGGTTGTGCCAGGAGGGTCTCTTAATGCCTTCCTTTCTCTTCTCATCGGAGTTT
TTTCACAAAGACTTGCCATGGTAAAGAAGAAGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAT
AGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCCCAATTGCT
TGGACTGTAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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