The detailed information of tRNA gene sequence


Sequence ID>CHL090900340
Genome IDDQ887677
Search identical group
Phylum/ClassViridiplantae
SpeciesPiper cenocladum
Start position on genome 107496
End posion on genome 108375
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ctcggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATGGCGGATGTCAGCGGTTCGAG
TCCGCTTATCTCagct
Downstream region at tRNA end position 
cgtgacctta
Secondary structure (Cloverleaf model)
>CHL090900340	Ala	TGC
                   g      agct cgtgacctta
                     G - C
                     G + T
                     G - C
                     G + T
                     A   A
                     T   T
                     A - T          G A
                    T     C G C C T     G
      T G A        A          |   +     C
    T       C T C G       C A G C G     T
    G       | | | |                 G T
    G       G A G C
      T A          T     GATGT
                    C - G
                    C   C
                    G   G
                    C - G
                    T   T
                  C       A *
                  T       A
                    T G C
intron: position=39, length=807 (in A-loop)
TTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAAC
CGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACA
AAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGCCAGATCTAGTATAGATCGTACATG
GACGATAGTTGGAGTCGGCGGCTCCCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCTAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAGGAA
AATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCA
TCCAGGGGTCACAGACCGACCATAGACCCTGTTCAATAAGCGGAACGCATTAGCTGTCCGCTCTCTGGTT
GGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAACCAAAGAG
TCGGGCGGAAGCGGAAAAAGGGGGGAGAGCTCTCTGTTCCTGGTTCTCCTGTAGCTGGATCCTCCGGAAC
CACAAGAATAGAATCCTTAGAATGGGATTCCAACTCAGCACCTTTTGAGAAGAGTTGCTCTTTGGAGAGC
ACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAA
TCAGTCGGGGAGGCCCGAGAGGCGGTAGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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