The detailed information of tRNA gene sequence


Sequence ID>CHL090900342
Genome IDDQ887677
Search identical group
Phylum/ClassViridiplantae
SpeciesPiper cenocladum
Start position on genome 141878
End posion on genome 140862
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gaggcccgca
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgca
Downstream region at tRNA end position 
gcgccgggga
Secondary structure (Cloverleaf model)
>CHL090900342	Ile	GAT
                   a      Agca gcgccgggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=945 (in A-loop)
TTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCTG
ACCCGGAGATGTAGATCATCCAAGGCACAGTAGCATGGCGTACTCCTCCTGTTCGAACCGGAGTTTTAAA
CCAAACTTCTCCTCAGGAGGATAGATGGGGCGGTTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTC
ACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCACGGCTCCTCTCTTCTCGAGAATCCATACATCCCT
TATCAGTGTATGTACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGCGAAAATGGAGCACCT
AACAACGCATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTA
CCATTCGAGCCTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCAGCAATCAATAGGATTTCCCTAA
TCCTTCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTTTTTCCTTTCCGCAGGGACCAGGAGATTGGAT
CTAGCCATAAGAAGAATGCTTGGTATAAATAAACGGACTTCTTGGTCTTCGACCCCCTCAGTCACTACGA
ACGCCCCCCGATCAGTGCAAAGGGATGTGTCTATTTATCTATCTCTTGACTCAAAATGGGGGCAGGTTTG
AAAAAGGATCTTAGAGTGTCTAGGATTGGGCCCGGAGGGTCTCTTAACGCCTTCTTTTTCTTCTCATCGG
AGTTATTTCACAAAGACTTATCATGGTAAGGAAGAAGGGGAGAACAAGCACACTTGGAGAGCGCAGTACA
ACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAAGAATCTATTGATTCTCTCCCA
ATTGGTTGGATCGTAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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