The detailed information of tRNA gene sequence


Sequence ID>CHL090900346
Genome IDDQ897681
Search identical group
Phylum/ClassViridiplantae
SpeciesPelargonium x hortorum
Start position on genome 85321
End posion on genome 84294
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgac
tRNA gene sequence 
GGGCTCTTAGCTCAGTGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaagga
Secondary structure (Cloverleaf model)
>CHL090900346	Ile	GAT
                   c      Agct gcgccaagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C   T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=956 (in A-loop)
TTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCTG
ACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACTGGGGTTTGAAA
CCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAGTGTAGATCCAACTTTCTATTC
ACCCGTGGGATCCGGGCGGTCCGGGGGGGACCACCACGGCTCCTCTCTTCTCGAGAATCCATACATCCCT
TATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAAGAAAATGGAG
CACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCCTTCTGGGGTGACGGAGGGA
TCGTACCATTCGAGCCTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAAGAATCAAT
AGGTCTTGTCAGAGCCTCCCTTCTCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTTCTCAGGGACCAGG
AGATTGGATCTAGCCGTAAGAAGAATGCTTGGCTGATAAATCACTCACTTCTTGGTATTCGACCCCCTTA
GTCACTACGGGCGCCCCCGATCCGTGCAATGGGATGTGTCTATTTCTCTATCTCTTGGCTCGAAATGGGA
GCAGGTTTGAAAAAAGGATCTTAGAGTGTCTAGGGTTGGACCCGGAGGGTCTCTTAACGCCTTCTTTTTT
CTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACGAGCACACTTGGAG
AGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATTTCTTG
ATTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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