The detailed information of tRNA gene sequence


Sequence ID>CHL090900403
Genome IDX15901
Search identical group
Phylum/ClassViridiplantae
SpeciesOryza sativa Japonica Group
Start position on genome 51037
End posion on genome 50367
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
atctctgaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACCGAGAAGGTCTACGGTTCGAA
TCCGTATAGCCCTAata
Downstream region at tRNA end position 
tgtccttttt
Secondary structure (Cloverleaf model)
>CHL090900403	Val	TAC
                   a      Aata tgtccttttt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        A     AGGTC
                    A   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=597 (in A-loop)
GTGCGCCAATGCTTTTCAAGGGAGCTTATTATGCAATGAACATAGTGGATCTTCTTGCAAAATCAACGTC
TTACTTCATGGATTCGAGAGAATAGGAGAACAGTCGCCTGACAAATAGTTGGTTCAGTCCGATTCAGGTA
CCAATCCAGGTGCCTAAACAAATAGAACCTTTATTGATTTGCTAGTTGATAAGGTAAATATCCAGCCCAC
TAAATGCTAGGCTTAATGAGGATAAGGGCCTCCAAAAAAATTCTTTTCGTTCTATGAACTTTAAGGTGTA
TGAAGTCTCATAGTCAACTCTTGTAGCGGAACGATAGAGACTCTATTTCACTTAGGTTGATTTAATTTAG
GCCGGCGAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGCTCTTAGATAGATCATAAT
ACAAATAATCAATCAGAGCGCAGGGAGCCATCTCATTATCTTTCCGTAAAGAAAAACTATGGTGGACTAA
CTGATCTTTCTATCAGTTGATAAAAGAGCCCAATGCAAAAAAAATGCATGTTGGGTCTTTGAAACAGTTC
GAATCATTTCGATAATAATCCGTTTGATCTGTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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