The detailed information of tRNA gene sequence


Sequence ID>CHL090900406
Genome IDX15901
Search identical group
Phylum/ClassViridiplantae
SpeciesOryza sativa Japonica Group
Start position on genome 120935
End posion on genome 120051
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position
cttggctcgg
tRNA gene sequence
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcc
Downstream region at tRNA end position
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL090900406	Ala	TGC
                   g      Agcc cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=812 (in A-loop)
TTGGGTCGTTGCGATTACGGGTTGGCTGTCTAATTGTCCAGGCGGTAATGGTAGTATCTTGTACCTGAAC
CGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACTGAAACATGCCACTGAAAGACTCTACTGAGACA
AAAAGATGGGCTGTCAAAAAGGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACA
TGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGCTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAG
TGTGGCCCTTGCGAATAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAG
GAAAATCCATGGACCGACCCCATTATCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCG
GCGTCCAGGGGTCACGGACCGACCATAGACCCTGTTCAATAAGTGGAACACATTAGCCGTCCGCTCTCCG
GTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTTAAGTTTAAGATCAA
AGAGTCGGGCGGAAAAAGGGGAGAGCTCCCCGTTCCTGGTTCTCCTGTAGCTGGATTCCCCGGAACCACA
AGAATCCTTAGAATGGGATTCCAACTCAGCACCTTTTGTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGA
GAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGT
AGAACCCGTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTGT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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