The detailed information of tRNA gene sequence


Sequence ID>CHL090900407
Genome IDX15901
Search identical group
Phylum/ClassViridiplantae
SpeciesOryza sativa Japonica Group
Start position on genome 122018
End posion on genome 121000
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcgcgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATAAGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL090900407	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       A *
                  T       A
                    G A T
intron: position=39, length=947 (in A-loop)
TTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCTG
ACCCGAAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTTGAATCGGAGTTTGAAA
CCAAACAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCCATGTAGATCTAACTTTCT
ATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGGCACTACGGCTCCTCTCTTCTCGAGAATCCATACATC
CCTTATCAGTGTATGGAGAGCTATCTCTCGAGCACAGGTTGAGGTTCGTCCTCAATGGGAAAATGGAGCA
CCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCTTTCATTCTGGGGTGACGGAGGGATCG
TACCATTCGAGCCTTTTTTTCATGCTTTTCCCGGCGGTCTGGAGAAAGCAGCAATCAATAGGACTTCCCT
AATCCTCCCTTCCTGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGGTTGGATCT
AGCCATAAGAGGAATGCTTGGTATAAATAAGCCACTTCTTGGTCTTCGACTCCCTAAGTCACTACGAGCG
CCCTCGATCAGTGCAATGGGATGTGGCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGAGCAGGTTT
GAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACGCCTTCCTTTTTCTGCCCATC
GGAGTTATTTCCCAAGGACTTGCCATGGTAAGGGGGAGAAGGGGAAGAAGCACACTTGAAGAGCGCAGTA
CAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAGTCTATTGATTCTCTCC
CAATTGGTTGGATCGTAGGGGCGATGATTTACTTCAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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