The detailed information of tRNA gene sequence


Sequence ID>SRA1000137
Genome IDSRR000288.56178
Search identical group
Phylum/ClassBacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Species
Start position on genome 14
End posion on genome 90
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gtacagctac
tRNA gene sequence 
AGGCGCGTAGCTCAGTTGGTTAGAGCGCACGACTGATAATCGTGAGGTCGGCAGTTCAAA
TCTGCCCGTGCCTACCA
Downstream region at tRNA end position 
tctnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000137	Ile	GAT
                   c      ACCA tctnnnnnnn
                     A - T
                     G - C
                     G - C
                     C - G
                     G + T
                     C - G
                     G - C          T A
                    T     C C G T C     A
      T G A        A      | | | | |     A
    T       C T C G       G G C A G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    C - G
                    A - T
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A
                    G A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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