The detailed information of tRNA gene sequence


Sequence ID>SRA1000391
Genome IDSRR001042.47832
Search identical group
Phylum/ClassLine Islands Corals, viral fraction of Christmas Atoll (SRP000134)
Species
Start position on genome 105
End posion on genome 21
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
nnnngaattt
tRNA gene sequence 
GGAGAGGTGCCAGAGTGGTAATGGAGCAGATTGCTAATCTGTCGACGGGAAACCGTCGCC
GGGGTTCGAATCCCCGTCTCTCCGCag
Downstream region at tRNA end position 
aaataacctg
Secondary structure (Cloverleaf model)
>SRA1000391	Ser	GCT
                   t      GCag aaataacctg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     G C C C C     A
        G A        G      | | | | |     G
      T     G A C C       C G G G G     C
      G       | | |                 T T
      G     A T G G
        T A        A     CGACGGGAAACCGTCGC
                    G + T
                    C - G
                    A - T
                    G - C
                    A - T
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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