The detailed information of tRNA gene sequence


Sequence ID>SRA1000446
Genome IDSRR001042.151722
Search identical group
Phylum/ClassLine Islands Corals, viral fraction of Christmas Atoll (SRP000134)
Species
Start position on genome 11
End posion on genome 100
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
aatgtaatta
tRNA gene sequence 
GGAGAGATGGCCGAGCGGTTTAAGGCGCACGCTTGGAGAGCGTGTATAGGGGCAACTCTA
TCGTGGGTTCGAATCCCACTCTCTCCGCCA
Downstream region at tRNA end position 
aaaaattcgt
Secondary structure (Cloverleaf model)
>SRA1000446	Ser	GGA
                   a      GCCA aaaaattcgt
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C A C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      T T A        G     TATAGGGGCAACTCTATC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  T       A
                  T       G
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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