The detailed information of tRNA gene sequence


Sequence ID>SRA1000460
Genome IDSRR001042.169392
Search identical group
Phylum/ClassLine Islands Corals, viral fraction of Christmas Atoll (SRP000134)
Species
Start position on genome 26
End posion on genome 115
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cctagttcac
tRNA gene sequence 
GGAGAGATGGCTGAGCGGTTGAAAGCACCGGTCTTGAAAACCGGCAAAGGGGCAACTCTT
TCCTGGGTTCGAATCCCAGTCTCTCCGCCA
Downstream region at tRNA end position 
tttaacnnnn
Secondary structure (Cloverleaf model)
>SRA1000460	Ser	TGA
                   c      GCCA tttaacnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     G A C C C     A
      C G A        G      | | | | |     G
    G       G T C G       C T G G G     C
    G         | | |                 T T
    T       A A G C
      T G A        A     CAAAGGGGCAACTCTTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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