The detailed information of tRNA gene sequence


Sequence ID>SRA1000488
Genome IDSRR001042.236742
Search identical group
Phylum/ClassLine Islands Corals, viral fraction of Christmas Atoll (SRP000134)
Species
Start position on genome 110
End posion on genome 21
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
nnnnnnnnng
tRNA gene sequence 
GTAGAGATGGCCGAGTGGTTGAAGGCGCACGCTTGGAAAGCGTGTATAGGGGAAACTCTA
TCATGGGTTCGAATCCCATTCTCTCCGCCA
Downstream region at tRNA end position 
aaatttataa
Secondary structure (Cloverleaf model)
>SRA1000488	Ser	GGA
                   g      GCCA aaatttataa
                     G - C
                     T   C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     T A C C C     A
      T G A        G      | | | | |     G
    G       G C C G       A T G G G     C
    G         | | |                 T T
    T       A G G C
      T G A        G     TATAGGGGAAACTCTATC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  T       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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