The detailed information of tRNA gene sequence


Sequence ID>SRA1000661
Genome IDSRR001046.16305
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 23
End posion on genome 98
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tcaatcattt
tRNA gene sequence 
AGGGCGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGT
CCTGTCCGCCCTGCAA
Downstream region at tRNA end position 
gggaaggnnn
Secondary structure (Cloverleaf model)
>SRA1000661	Trp	CCA
                   t      GCAA gggaaggnnn
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T G
                    T     T G T C C     A
      T A A        G      + | | | |     G
    T       C T C G       G C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     AGGTT
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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