The detailed information of tRNA gene sequence


Sequence ID>SRA1000665
Genome IDSRR001046.20445
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 26
End posion on genome 101
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
cccccgacac
tRNA gene sequence 
GGGGCCTTAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAGGGGTTCGATC
CCCCTAGGCTCCACCA
Downstream region at tRNA end position 
aacacccccn
Secondary structure (Cloverleaf model)
>SRA1000665	Ala	GGC
                   c      ACCA aacacccccn
                     G - C
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     T - A          C T
                    T     T C C C C     A
      C G A        A      | | | | |     G
    T       C T C G       A G G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    T - A
                    T - A
                    G - C
                    C - G
                  A       T
                  T       A
                    G G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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