The detailed information of tRNA gene sequence


Sequence ID>SRA1000677
Genome IDSRR001046.57104
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 17
End posion on genome 91
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ttcaccactt
tRNA gene sequence 
GGTGGAGTGGCCGAGAGGCGAGGCAACGGACTGCAAATCCGTGTACANCGGGTTCGAATC
CCGTCTCCACCTCGA
Downstream region at tRNA end position 
aaacaaacaa
Secondary structure (Cloverleaf model)
>SRA1000677	Cys	GCA
                   t      TCGA aaacaaacaa
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C
                     A - T
                     G - C          T A
                    T     T G C C C     A
        G A        G        | | | |     G
      A     G C C G       N C G G G     C
      G       | | |                 T T
      G     A G G C
        C G        A     GTACA
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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